Moving in the Right Direction: Protein Vibrational Steering Function

• Published in: Biophysical journal Vol. 112; no. 5; pp. 933 - 942
• Main Authors: Niessen, Katherine A, Xu, Mengyang, Paciaroni, Alessandro, Orecchini, Andrea, Snell, Edward H, Markelz, Andrea G
• Format: Journal Article
• Language: English
• Published: New York Biophysical Society 14-03-2017; The Biophysical Society
• Subjects: Biophysics; Energy; Enzymes; Proteins; Vibration
• ISSN: 0006-3495; 1542-0086
• DOI: 10.1016/j.bpj.2016.12.049

Nearly all protein functions require structural change, such as enzymes clamping onto substrates, and ion channels opening and closing. These motions are a target for possible new therapies; however, the control mechanisms are under debate. Calculations have indicated protein vibrations enable structural change. However, previous measurements found these vibrations only weakly depend on the functional state. By using the novel technique of anisotropic terahertz microscopy, we find that there is a dramatic change to the vibrational directionality with inhibitor binding to lysozyme, whereas the vibrational energy distribution, as measured by neutron inelastic scattering, is only slightly altered. The anisotropic terahertz measurements provide unique access to the directionality of the intramolecular vibrations, and immediately resolve the inconsistency between calculations and previous measurements, which were only sensitive to the energy distribution. The biological importance of the vibrational directions versus the energy distribution is revealed by our calculations comparing wild-type lysozyme with a higher catalytic rate double deletion mutant. The vibrational energy distribution is identical, but the more efficient mutant shows an obvious reorientation of motions. These results show that it is essential to characterize the directionality of motion to understand and control protein dynamics to optimize or inhibit function.