Comparison of human and mouse E-selectin binding to Sialyl-Lewis(x)

• Published in: BMC structural biology Vol. 16; no. 1; p. 10
• Main Authors: Rocheleau, Anne D, Cao, Thong M, Takitani, Tait, King, Michael R
• Format: Journal Article
• Language: English
• Published: England 02-07-2016
• Subjects: Amino Acid Sequence; Animals; Binding Sites; E-Selectin - chemistry; E-Selectin - metabolism; Humans; Mice; Molecular Docking Simulation; Molecular Dynamics Simulation; Molecular Sequence Data; Oligosaccharides - chemistry; Oligosaccharides - metabolism; Sequence Alignment; Thermodynamics; Molecular dynamics; E-selectin; Docking; Receptor; Steered molecular dynamics; Cell adhesion
• ISSN: 1472-6807
• DOI: 10.1186/s12900-016-0060-x

During inflammation, leukocytes are captured by the selectin family of adhesion receptors lining blood vessels to facilitate exit from the bloodstream. E-selectin is upregulated on stimulated endothelial cells and binds to several ligands on the surface of leukocytes. Selectin:ligand interactions are mediated in part by the interaction between the lectin domain and Sialyl-Lewis x (sLe(x)), a tetrasaccharide common to selectin ligands. There is a high degree of homology between selectins of various species: about 72 and 60 % in the lectin and EGF domains, respectively. In this study, molecular dynamics, docking, and steered molecular dynamics simulations were used to compare the binding and dissociation mechanisms of sLe(x) with mouse and human E-selectin. First, a mouse E-selectin homology model was generated using the human E-selectin crystal structure as a template.
Mouse E-selectin was found to have a greater interdomain angle, which has been previously shown to correlate with stronger binding among selectins. sLe(x) was docked onto human and mouse E-selectin, and the mouse complex was found to have a higher free energy of binding and a lower dissociation constant, suggesting stronger binding. The mouse complex had higher flexibility in a few key residues. Finally, steered molecular dynamics was used to dissociate the complexes at force loading rates of 2000-5000 pm/ps(2). The mouse complex took longer to dissociate at every force loading rate and the difference was statistically significant at 3000 pm/ps(2). When sLe(x)-coated microspheres were perfused through microtubes coated with human or mouse E-selectin, the particles rolled more slowly on mouse E-selectin.
Both molecular dynamics simulations and microsphere adhesion experiments show that mouse E-selectin protein binds more strongly to sialyl Lewis x ligand than human E-selectin. This difference was explained by a greater interdomain angle for mouse E-selectin, and greater flexibility in key residues. Future work could introduce similar amino acid substitutions into the human E-selectin sequence to further modulate adhesion behavior.