Exploring novel dilazep derivatives as hENT1 inhibitors and potentially covalent molecular tools

• Published in: Purinergic signalling
• Main Authors: Dilweg, Majlen A, Gorostiola González, Marina, de Ruiter, Martijn D, Meijboom, Nadine J, van Veldhoven, Jacobus P D, Liu, Rongfang, Jespers, Willem, van Westen, Gerard J P, Heitman, Laura H, IJzerman, Adriaan P, van der Es, Daan
• Format: Journal Article
• Language: English
• Published: Netherlands 15-06-2024
• Subjects: Solute carrier; Covalent inhibitor; Human equilibrative nucleoside transporter 1; Structure–activity relationship; Dilazep
• ISSN: 1573-9546; 1573-9546
• DOI: 10.1007/s11302-024-10026-x

The human equilibrative nucleoside transporter 1 (SLC29A1, hENT1) is a solute carrier that modulates the passive transport of nucleosides and nucleobases, such as adenosine. This nucleoside regulates various physiological processes, such as vasodilation and -constriction, neurotransmission and immune defense. Marketed drugs such as dilazep and dipyridamole have proven useful in cardiovascular afflictions, but the application of hENT1 inhibitors can be beneficial in a number of other diseases. In this study, 39 derivatives of dilazep's close analogue ST7092 were designed, synthesized and subsequently assessed using [
H]NBTI displacement assays and molecular docking. Different substitution patterns of the trimethoxy benzoates of ST7092 reduced interactions within the binding pocket, resulting in diminished hENT1 affinity. Conversely, [
H]NBTI displacement by potentially covalent compounds 14b, 14c, and 14d resulted in high affinities (K
values between 1.1 and 17.5 nM) for the transporter, primarily by the ability of accommodating the inhibitors in various ways in the binding pocket. However, any indication of covalent binding with amino acid residue C439 remained absent, conceivably as a result of decreased nucleophilic residue reactivity. In conclusion, this research introduces novel dilazep derivatives that are active as hENT1 inhibitors, along with the first high affinity dilazep derivatives equipped with an electrophilic warhead. These findings will aid the rational and structure-based development of novel hENT1 inhibitors and pharmacological tools to study hENT1's function, binding mechanisms, and its relevance in (patho)physiological conditions.