Disruption of microbial community composition and identification of plant growth promoting microorganisms after exposure of soil to rapeseed-derived glucosinolates

• Published in: PloS one Vol. 13; no. 7; p. e0200160
• Main Authors: Siebers, Meike, Rohr, Thomas, Ventura, Marina, Schütz, Vadim, Thies, Stephan, Kovacic, Filip, Jaeger, Karl-Erich, Berg, Martin, Dörmann, Peter, Schulz, Margot
• Format: Journal Article
• Language: English
• Published: United States Public Library of Science 03-07-2018; Public Library of Science (PLoS)
• Subjects: Alliaria petiolata; Analysis; Bacteria; Biodiversity; Biology and Life Sciences; Biotechnology; Brassica; Brassica napus; Brassicaceae; Calcium; Calcium phosphates; Canola; Community composition; Community structure; Deoxyribonucleic acid; DNA; DNA fingerprinting; DNA sequencing; Enzymatic activity; Enzyme activity; Enzymes; Exposure; Fingerprinting; Fungi; Fusarium oxysporum; Gene sequencing; Glucosinolates; Health risk assessment; Health risks; Medicine and Health Sciences; Metabolites; Microbiota; Microorganisms; Nematodes; Physiology; Plant growth; Plant metabolites; Plants (botany); Rapeseed; Secondary metabolites; Seeds; Soil bacteria; Soil dynamics; Soil microbiology; Soil microorganisms; Soil structure; Soil treatment; Soils; United States > US; Germany
• ISSN: 1932-6203; 1932-6203
• DOI: 10.1371/journal.pone.0200160

Land plants are engaged in intricate communities with soil bacteria and fungi indispensable for plant survival and growth. The plant-microbial interactions are largely governed by specific metabolites. We employed a combination of lipid-fingerprinting, enzyme activity assays, high-throughput DNA sequencing and isolation of cultivable microorganisms to uncover the dynamics of the bacterial and fungal community structures in the soil after exposure to isothiocyanates (ITC) obtained from rapeseed glucosinolates. Rapeseed-derived ITCs, including the cyclic, stable goitrin, are secondary metabolites with strong allelopathic affects against other plants, fungi and nematodes, and in addition can represent a health risk for human and animals. However, the effects of ITC application on the different bacterial and fungal organisms in soil are not known in detail. ITCs diminished the diversity of bacteria and fungi. After exposure, only few bacterial taxa of the Gammaproteobacteria, Bacteriodetes and Acidobacteria proliferated while Trichosporon (Zygomycota) dominated the fungal soil community. Many surviving microorganisms in ITC-treated soil where previously shown to harbor plant growth promoting properties. Cultivable fungi and bacteria were isolated from treated soils. A large number of cultivable microbial strains was capable of mobilizing soluble phosphate from insoluble calcium phosphate, and their application to Arabidopsis plants resulted in increased biomass production, thus revealing growth promoting activities. Therefore, inclusion of rapeseed-derived glucosinolates during biofumigation causes losses of microbiota, but also results in enrichment with ITC-tolerant plant microorganisms, a number of which show growth promoting activities, suggesting that Brassicaceae plants can shape soil microbiota community structure favoring bacteria and fungi beneficial for Brassica plants.