Structure and Dynamics of ATP and the ATP-Zn 2+ Complex in Solution

• Published in: The journal of physical chemistry letters Vol. 15; no. 39; pp. 10039 - 10045
• Main Authors: Rossi, Emma, Kundu, Achintya, Ferrarini, Alberta, Elsaesser, Thomas, Sulpizi, Marialore
• Format: Journal Article
• Language: English
• Published: United States 03-10-2024
• ISSN: 1948-7185; 1948-7185
• DOI: 10.1021/acs.jpclett.4c02296

Despite the crucial role of ATP in life and artificial life-like applications, fundamental aspects relevant to its function, such as its conformational properties and its interaction with water and ions, remain unclear. Here, by integrating linear and two-dimensional infrared spectroscopy with
molecular dynamics, we provide a detailed characterization of the vibrational spectra of the phosphate groups in ATP and in its complex with Zn
in water. Our study highlights the role of conformational disorder and solvation dynamics, beyond the harmonic normal-mode analysis, and reveals a complex scenario in which electronic and environmental effects tune the coupling between phosphate vibrations. We identify βγ-bidentate and αβγ-tridentate modes as the preferential coordination modes of Zn
, as was proposed in the literature for Mg
, although this conclusion is reached by a different spectral interpretation.