Uncovering fungal community composition in natural habitat of Ophiocordyceps sinensis using high-throughput sequencing and culture-dependent approaches

• Published in: BMC microbiology Vol. 20; no. 1; p. 331
• Main Authors: Zhang, Chuan-Bo, Ren, Chao-Hui, Wang, Yan-Li, Wang, Qi-Qi, Wang, Yun-Sheng, Weng, Qing-Bei
• Format: Journal Article
• Language: English
• Published: England BioMed Central Ltd 02-11-2020; BioMed Central; BMC
• Subjects: Abundance; Ascomycota; Bioactive compounds; Climate change; Cloning; Community composition; Community structure; Culturable fungi; Culture media; Deoxyribonucleic acid; DNA; Ecosystems; Fermentation; Fungal communities; Fungi; Genera; Genetic aspects; Genotypes; Habitats; Identification and classification; Insects; Metabolism; Metabolites; Microbial colonies; Microbiological research; Microbiota; Microenvironments; Microhabitats; Mycelia; Next-generation sequencing; Ophiocordyceps sinensis; Ophiocordyceps sinensis; External mycelial cortices; Sequence analysis; Soil microhabitats; Soils; Trichoderma; China; Tibetan Plateau; Ophiocordyceps sinensis; External mycelial cortices; Fungal communities; Culturable fungi; Soil microhabitats
• ISSN: 1471-2180; 1471-2180
• DOI: 10.1186/s12866-020-01994-2

The fungal communities inhabiting natural Ophiocordyceps sinensis play critical ecological roles in alpine meadow ecosystem, contribute to infect host insect, influence the occurrence of O. sinensis, and are repertoire of potential novel metabolites discovery. However, a comprehensive understanding of fungal communities of O. sinensis remain elusive. Therefore, the present study aimed to unravel fungal communities of natural O. sinensis using combination of high-throughput sequencing and culture-dependent approaches.
A total of 280,519 high-quality sequences, belonging to 5 fungal phyla, 15 classes, 41 orders, 79 families, 112 genera, and 352 putative operational taxonomic units (OTUs) were obtained from natural O. sinensis using high-throughput sequencing. Among of which, 43 genera were identified in external mycelial cortices, Ophiocordyceps, Sebacinia and Archaeorhizomyces were predominant genera with the abundance of 95.86, 1.14, 0.85%, respectively. A total of 66 genera were identified from soil microhabitat, Inocybe, Archaeorhizomyces, unclassified Thelephoraceae, Tomentella, Thelephora, Sebacina, unclassified Ascomycota and unclassified fungi were predominant genera with an average abundance of 53.32, 8.69, 8.12, 8.12, 7.21, 4.6, 3.08 and 3.05%, respectively. The fungal communities in external mycelial cortices were significantly distinct from soil microhabitat. Meanwhile, seven types of culture media were used to isolate culturable fungi at 16 °C, resulted in 77 fungal strains identified by rDNA ITS sequence analysis, belonging to 33 genera, including Ophiocordyceps, Trichoderma, Cytospora, Truncatella, Dactylonectria, Isaria, Cephalosporium, Fusarium, Cosmospora and Paecilomyces, etc.. Among all culturable fungi, Mortierella and Trichoderma were predominant genera.
The significantly differences and overlap in fungal community structure between two approaches highlight that the integration of high-throughput sequencing and culture-dependent approaches would generate more information. Our result reveal a comprehensive understanding of fungal community structure of natural O. sinensis, provide new insight into O. sinensis associated fungi, and support that microbiota of natural O. sinensis is an untapped source for novel bioactive metabolites discovery.