Noncoding RNAs link metabolic reprogramming to immune microenvironment in cancers

Noncoding RNAs link metabolic reprogramming to immune microenvironment in cancers

Altered metabolic patterns in tumor cells not only meet their own growth requirements but also shape an immunosuppressive microenvironment through multiple mechanisms. Noncoding RNAs constitute approximately 60% of the transcriptional output of human cells and have been shown to regulate numerous ce...

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Published in:Journal of hematology and oncology Vol. 14; no. 1; pp. 169 - 26
Main Authors: Zhang, Yiyin, Mao, Qijiang, Xia, Qiming, Cheng, Jiaxi, Huang, Zhengze, Li, Yirun, Chen, Peng, Yang, Jing, Fan, Xiaoxiao, Liang, Yuelong, Lin, Hui
Format: Journal Article
Language:English
Published: England BioMed Central Ltd 15-10-2021
BioMed Central
BMC
Subjects:
Adenosine
Amino acids
Animals
Antigens
Apoptosis
B cells
Bioinformatic approach
Cancer
Cytotoxicity
Enzymes
Fatty acids
Gene Expression Regulation, Neoplastic
Genetic transcription
Hematology
Humans
Immune microenvironment
Immune response
Immunity
Immunotherapy
Infiltration
Lymphocytes
Metabolic Networks and Pathways
Metabolism
Metabolites
Metastases
Microenvironments
miRNA
Neoplasms - genetics
Neoplasms - immunology
Neoplasms - metabolism
Noncoding RNAs
Nutrient requirements
Oncology
Physiological aspects
Review
RNA, Long Noncoding - genetics
RNA, Long Noncoding - immunology
RNA, Long Noncoding - metabolism
TIMELnc manual
Transcription
Tumor cells
Tumor metabolism
Tumor Microenvironment
Tumors
Immune microenvironment
Tumor metabolism
TIMELnc manual
Bioinformatic approach
Noncoding RNAs
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Abstract Altered metabolic patterns in tumor cells not only meet their own growth requirements but also shape an immunosuppressive microenvironment through multiple mechanisms. Noncoding RNAs constitute approximately 60% of the transcriptional output of human cells and have been shown to regulate numerous cellular processes under developmental and pathological conditions. Given their extensive action mechanisms based on motif recognition patterns, noncoding RNAs may serve as hinges bridging metabolic activity and immune responses. Indeed, recent studies have shown that microRNAs, long noncoding RNAs and circRNAs are widely involved in tumor metabolic rewiring, immune cell infiltration and function. Hence, we summarized existing knowledge of the role of noncoding RNAs in the remodeling of tumor metabolism and the immune microenvironment, and notably, we established the TIMELnc manual, which is a free and public manual for researchers to identify pivotal lncRNAs that are simultaneously correlated with tumor metabolism and immune cell infiltration based on a bioinformatic approach.
AbstractList Altered metabolic patterns in tumor cells not only meet their own growth requirements but also shape an immunosuppressive microenvironment through multiple mechanisms. Noncoding RNAs constitute approximately 60% of the transcriptional output of human cells and have been shown to regulate numerous cellular processes under developmental and pathological conditions. Given their extensive action mechanisms based on motif recognition patterns, noncoding RNAs may serve as hinges bridging metabolic activity and immune responses. Indeed, recent studies have shown that microRNAs, long noncoding RNAs and circRNAs are widely involved in tumor metabolic rewiring, immune cell infiltration and function. Hence, we summarized existing knowledge of the role of noncoding RNAs in the remodeling of tumor metabolism and the immune microenvironment, and notably, we established the TIMELnc manual, which is a free and public manual for researchers to identify pivotal lncRNAs that are simultaneously correlated with tumor metabolism and immune cell infiltration based on a bioinformatic approach.
Abstract Altered metabolic patterns in tumor cells not only meet their own growth requirements but also shape an immunosuppressive microenvironment through multiple mechanisms. Noncoding RNAs constitute approximately 60% of the transcriptional output of human cells and have been shown to regulate numerous cellular processes under developmental and pathological conditions. Given their extensive action mechanisms based on motif recognition patterns, noncoding RNAs may serve as hinges bridging metabolic activity and immune responses. Indeed, recent studies have shown that microRNAs, long noncoding RNAs and circRNAs are widely involved in tumor metabolic rewiring, immune cell infiltration and function. Hence, we summarized existing knowledge of the role of noncoding RNAs in the remodeling of tumor metabolism and the immune microenvironment, and notably, we established the TIMELnc manual, which is a free and public manual for researchers to identify pivotal lncRNAs that are simultaneously correlated with tumor metabolism and immune cell infiltration based on a bioinformatic approach.
Altered metabolic patterns in tumor cells not only meet their own growth requirements but also shape an immunosuppressive microenvironment through multiple mechanisms. Noncoding RNAs constitute approximately 60% of the transcriptional output of human cells and have been shown to regulate numerous cellular processes under developmental and pathological conditions. Given their extensive action mechanisms based on motif recognition patterns, noncoding RNAs may serve as hinges bridging metabolic activity and immune responses. Indeed, recent studies have shown that microRNAs, long noncoding RNAs and circRNAs are widely involved in tumor metabolic rewiring, immune cell infiltration and function. Hence, we summarized existing knowledge of the role of noncoding RNAs in the remodeling of tumor metabolism and the immune microenvironment, and notably, we established the TIMELnc manual, which is a free and public manual for researchers to identify pivotal lncRNAs that are simultaneously correlated with tumor metabolism and immune cell infiltration based on a bioinformatic approach. Keywords: Noncoding RNAs, Tumor metabolism, Immune microenvironment, TIMELnc manual, Bioinformatic approach
Altered metabolic patterns in tumor cells not only meet their own growth requirements but also shape an immunosuppressive microenvironment through multiple mechanisms. Noncoding RNAs constitute approximately 60% of the transcriptional output of human cells and have been shown to regulate numerous cellular processes under developmental and pathological conditions. Given their extensive action mechanisms based on motif recognition patterns, noncoding RNAs may serve as hinges bridging metabolic activity and immune responses. Indeed, recent studies have shown that microRNAs, long noncoding RNAs and circRNAs are widely involved in tumor metabolic rewiring, immune cell infiltration and function. Hence, we summarized existing knowledge of the role of noncoding RNAs in the remodeling of tumor metabolism and the immune microenvironment, and notably, we established the TIMELnc manual, which is a free and public manual for researchers to identify pivotal lncRNAs that are simultaneously correlated with tumor metabolism and immune cell infiltration based on a bioinformatic approach.Altered metabolic patterns in tumor cells not only meet their own growth requirements but also shape an immunosuppressive microenvironment through multiple mechanisms. Noncoding RNAs constitute approximately 60% of the transcriptional output of human cells and have been shown to regulate numerous cellular processes under developmental and pathological conditions. Given their extensive action mechanisms based on motif recognition patterns, noncoding RNAs may serve as hinges bridging metabolic activity and immune responses. Indeed, recent studies have shown that microRNAs, long noncoding RNAs and circRNAs are widely involved in tumor metabolic rewiring, immune cell infiltration and function. Hence, we summarized existing knowledge of the role of noncoding RNAs in the remodeling of tumor metabolism and the immune microenvironment, and notably, we established the TIMELnc manual, which is a free and public manual for researchers to identify pivotal lncRNAs that are simultaneously correlated with tumor metabolism and immune cell infiltration based on a bioinformatic approach.
ArticleNumber 169
Audience Academic
Author Fan, Xiaoxiao
Huang, Zhengze
Cheng, Jiaxi
Liang, Yuelong
Mao, Qijiang
Chen, Peng
Zhang, Yiyin
Xia, Qiming
Yang, Jing
Li, Yirun
Lin, Hui
Author_xml – sequence: 1
  givenname: Yiyin
  surname: Zhang
  fullname: Zhang, Yiyin
  organization: Department of General Surgery, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, 310016, China
– sequence: 2
  givenname: Qijiang
  surname: Mao
  fullname: Mao, Qijiang
  organization: Department of General Surgery, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, 310016, China
– sequence: 3
  givenname: Qiming
  surname: Xia
  fullname: Xia, Qiming
  organization: Department of General Surgery, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, 310016, China
– sequence: 4
  givenname: Jiaxi
  surname: Cheng
  fullname: Cheng, Jiaxi
  organization: Department of General Surgery, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, 310016, China
– sequence: 5
  givenname: Zhengze
  surname: Huang
  fullname: Huang, Zhengze
  organization: Department of General Surgery, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, 310016, China
– sequence: 6
  givenname: Yirun
  surname: Li
  fullname: Li, Yirun
  organization: Department of General Surgery, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, 310016, China
– sequence: 7
  givenname: Peng
  surname: Chen
  fullname: Chen, Peng
  organization: Department of General Surgery, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, 310016, China
– sequence: 8
  givenname: Jing
  surname: Yang
  fullname: Yang, Jing
  organization: Department of General Surgery, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, 310016, China
– sequence: 9
  givenname: Xiaoxiao
  surname: Fan
  fullname: Fan, Xiaoxiao
  email: fanxx_gs@zju.edu.cn, fanxx_gs@zju.edu.cn
  organization: State Key Laboratory of Modern Optical Instrumentations, Centre for Optical and Electromagnetic Research, College of Optical Science and Engineering, International Research Center for Advanced Photonics, Zhejiang University, Hangzhou, 310058, China. fanxx_gs@zju.edu.cn
– sequence: 10
  givenname: Yuelong
  surname: Liang
  fullname: Liang, Yuelong
  email: yuelongliang@zju.edu.cn
  organization: Department of General Surgery, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, 310016, China. yuelongliang@zju.edu.cn
– sequence: 11
  givenname: Hui
  surname: Lin
  fullname: Lin, Hui
  email: 369369@zju.edu.cn, 369369@zju.edu.cn
  organization: Zhejiang Engineering Research Center of Cognitive Healthcare, Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University, Hangzhou, 310016, China. 369369@zju.edu.cn
BackLink https://www.ncbi.nlm.nih.gov/pubmed/34654454$$D View this record in MEDLINE/PubMed
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Issue 1
Keywords Immune microenvironment
Tumor metabolism
TIMELnc manual
Bioinformatic approach
Noncoding RNAs
Language English
License 2021. The Author(s).
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Snippet Altered metabolic patterns in tumor cells not only meet their own growth requirements but also shape an immunosuppressive microenvironment through multiple...
Abstract Altered metabolic patterns in tumor cells not only meet their own growth requirements but also shape an immunosuppressive microenvironment through...
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SubjectTerms Adenosine
Amino acids
Animals
Antigens
Apoptosis
B cells
Bioinformatic approach
Cancer
Cytotoxicity
Enzymes
Fatty acids
Gene Expression Regulation, Neoplastic
Genetic transcription
Hematology
Humans
Immune microenvironment
Immune response
Immunity
Immunotherapy
Infiltration
Lymphocytes
Metabolic Networks and Pathways
Metabolism
Metabolites
Metastases
Microenvironments
miRNA
Neoplasms - genetics
Neoplasms - immunology
Neoplasms - metabolism
Noncoding RNAs
Nutrient requirements
Oncology
Physiological aspects
Review
RNA, Long Noncoding - genetics
RNA, Long Noncoding - immunology
RNA, Long Noncoding - metabolism
TIMELnc manual
Transcription
Tumor cells
Tumor metabolism
Tumor Microenvironment
Tumors
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Title Noncoding RNAs link metabolic reprogramming to immune microenvironment in cancers
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