Constrained catecholamines gain β2AR selectivity through allosteric effects on pocket dynamics

• Published in: Nature communications Vol. 14; no. 1; p. 2138
• Main Authors: Xu, Xinyu, Shonberg, Jeremy, Kaindl, Jonas, Clark, Mary J., Stößel, Anne, Maul, Luis, Mayer, Daniel, Hübner, Harald, Hirata, Kunio, Venkatakrishnan, A. J., Dror, Ron O., Kobilka, Brian K., Sunahara, Roger K., Liu, Xiangyu, Gmeiner, Peter
• Format: Journal Article
• Language: English
• Published: London Nature Publishing Group UK 14-04-2023; Nature Publishing Group; Nature Portfolio
• Subjects: 631/45/612/194; 631/535/1266; 631/92/613; 82/80; 82/83; 96/95; Adrenergic receptors; Allosteric properties; Amino acid sequence; Amino acids; Binding; Catecholamines; Drug development; Epinephrine; G protein-coupled receptors; Homology; Humanities and Social Sciences; Ligands; multidisciplinary; Norepinephrine; Receptors (physiology); Residues; Science; Science (multidisciplinary); Selective binding; Selectivity; Vestibules
• ISSN: 2041-1723; 2041-1723
• DOI: 10.1038/s41467-023-37808-y

G protein-coupled receptors (GPCRs) within the same subfamily often share high homology in their orthosteric pocket and therefore pose challenges to drug development. The amino acids that form the orthosteric binding pocket for epinephrine and norepinephrine in the β
1
and β
2
adrenergic receptors (β
1
AR and β
2
AR) are identical. Here, to examine the effect of conformational restriction on ligand binding kinetics, we synthesized a constrained form of epinephrine. Surprisingly, the constrained epinephrine exhibits over 100-fold selectivity for the β
2
AR over the β
1
AR. We provide evidence that the selectivity may be due to reduced ligand flexibility that enhances the association rate for the β
2
AR, as well as a less stable binding pocket for constrained epinephrine in the β
1
AR. The differences in the amino acid sequence of the extracellular vestibule of the β
1
AR allosterically alter the shape and stability of the binding pocket, resulting in a marked difference in affinity compared to the β
2
AR. These studies suggest that for receptors containing identical binding pocket residues, the binding selectivity may be influenced in an allosteric manner by surrounding residues, like those of the extracellular loops (ECLs) that form the vestibule. Exploiting these allosteric influences may facilitate the development of more subtype-selective ligands for GPCRs.
Constrained catecholamines gain β
2
AR selectivity. Although the orthosteric pockets are identical in β
1
AR and β
2
AR, surrounding residues allosterically modify the pockets and contribute to the β
2
AR selectivity of the constrained catecholamines.