Ancient DNA of narrow-headed vole reveal common features of the Late Pleistocene population dynamics in cold-adapted small mammals

• Published in: Proceedings of the Royal Society. B, Biological sciences Vol. 290; no. 1993; p. 20222238
• Main Authors: Baca, Mateusz, Popović, Danijela, Agadzhanyan, Alexander K, Baca, Katarzyna, Conard, Nicholas J, Fewlass, Helen, Filek, Thomas, Golubiński, Michał, Horáček, Ivan, Knul, Monika V, Krajcarz, Magdalena, Krokhaleva, Maria, Lebreton, Loïc, Lemanik, Anna, Maul, Lutz C, Nagel, Doris, Noiret, Pierre, Primault, Jérome, Rekovets, Leonid, Rhodes, Sara E, Royer, Aurélien, Serdyuk, Natalia V, Soressi, Marie, Stewart, John R, Strukova, Tatiana, Talamo, Sahra, Wilczyński, Jarosław, Nadachowski, Adam
• Format: Journal Article
• Language: English
• Published: England Royal Society, The 22-02-2023; The Royal Society
• Subjects: Animals; Arvicolinae; Arvicolinae - genetics; Bayes Theorem; DNA, Ancient; DNA, Mitochondrial; DNA, Mitochondrial - genetics; Earth Sciences; Genetic Variation; Palaeobiology; Paleontology; Phylogeny; Population Dynamics; Sciences of the Universe; habitat; paleoclimate; interstadials; mitochondrial DNA; Pleistocene; climate change
• ISSN: 0962-8452; 1471-2954
• DOI: 10.1098/rspb.2022.2238

The narrow-headed vole, collared lemming and common vole were the most abundant small mammal species across the Eurasian Late Pleistocene steppe-tundra environment. Previous ancient DNA studies of the collared lemming and common vole have revealed dynamic population histories shaped by climatic fluctuations. To investigate the extent to which species with similar adaptations share common evolutionary histories, we generated a dataset comprised the mitochondrial genomes of 139 ancient and 6 modern narrow-headed voles from several sites across Europe and northwestern Asia covering approximately the last 100 thousand years (kyr). We inferred Bayesian time-aware phylogenies using 11 radiocarbon-dated samples to calibrate the molecular clock. Divergence of the main mtDNA lineages across the three species occurred during marine isotope stages (MIS) 7 and MIS 5, suggesting a common response of species adapted to open habitat during interglacials. We identified several time-structured mtDNA lineages in European narrow-headed vole, suggesting lineage turnover. The timing of some of these turnovers was synchronous across the three species, allowing us to identify the main drivers of the Late Pleistocene dynamics of steppe- and cold-adapted species.