Predicting IDH Mutation Status in Low-Grade Gliomas Based on Optimal Radiomic Features Combined with Multi-Sequence Magnetic Resonance Imaging

• Published in: Diagnostics (Basel) Vol. 12; no. 12; p. 2995
• Main Authors: He, Ailing, Wang, Peng, Zhu, Aihua, Liu, Yankui, Chen, Jianhuan, Liu, Li
• Format: Journal Article
• Language: English
• Published: Switzerland MDPI AG 30-11-2022; MDPI
• Subjects: Analysis; Cancer; Care and treatment; Classification; Datasets; Diagnosis; Discriminant analysis; Feature selection; Gene mutations; Genetic aspects; glioma; Gliomas; Health aspects; IDH; Isocitrate dehydrogenase; Machine learning; Magnetic resonance imaging; Medical imaging; multi-sequence MRI; Mutation; Open source software; Patients; Radiomics; Regression analysis; Variance analysis; China; multi-sequence MRI; radiomics; glioma; IDH; machine learning
• ISSN: 2075-4418; 2075-4418
• DOI: 10.3390/diagnostics12122995

The IDH somatic mutation status is an important basis for the diagnosis and classification of gliomas. We proposed a "6-Step" general radiomics model to noninvasively predict the IDH mutation status by simultaneously tuning combined multi-sequence MRI and optimizing the full radiomics processing pipeline. Radiomic features (
= 3776) were extracted from multi-sequence MRI (T1, T2, FLAIR, and T1Gd) in low-grade gliomas (LGGs), and a total of 45,360 radiomics pipeline were investigated according to different settings. The predictive ability of the general radiomics model was evaluated with regards to accuracy, stability, and efficiency. Based on numerous experiments, we finally reached an optimal pipeline for classifying IDH mutation status, namely the T2+FLAIR combined multi-sequence with the wavelet image filter, mean data normalization, PCC dimension reduction, RFE feature selection, and SVM classifier. The mean and standard deviation of AUC, accuracy, sensitivity, and specificity were 0.873 ± 0.05, 0.876 ± 0.09, 0.875 ± 0.11, and 0.877 ± 0.15, respectively. Furthermore, 14 radiomic features that best distinguished the IDH mutation status of the T2+FLAIR multi-sequence were analyzed, and the gray level co-occurrence matrix (GLCM) features were shown to be of high importance. Apart from the promising prediction of the molecular subtypes, this study also provided a general tool for radiomics investigation.