Transcriptomic and proteomic profiling revealed reprogramming of carbon metabolism in acetate-grown human pathogen Candida glabrata

• Published in: Journal of biomedical science Vol. 28; no. 1; p. 1
• Main Authors: Chew, Shu Yih, Brown, Alistair J P, Lau, Benjamin Yii Chung, Cheah, Yoke Kqueen, Ho, Kok Lian, Sandai, Doblin, Yahaya, Hassan, Than, Leslie Thian Lung
• Format: Journal Article
• Language: English
• Published: England BioMed Central Ltd 02-01-2021; BioMed Central; BMC
• Subjects: Acetate; Acetates; Acetates - metabolism; Acetic acid; Amino acids; Annotations; Candida; Candida glabrata; Candida glabrata - metabolism; Candidiasis; Carbon; Carbon - metabolism; Carbon sources; Catabolism; Deoxyribonucleic acid; Deprivation; Dextrose; DNA; Fatty acids; Fructose; Fungal Proteins - metabolism; Fungi; Gene expression; Gene Expression Profiling; Genomes; Gluconeogenesis; Glucose; Glucose metabolism; Glyoxylate cycle; Health aspects; Intermediates; Isocitrate lyase; Macrophages; Malate synthase; Mass spectrometry; Metabolic response; Metabolism; Morbidity; Mortality; Mycoses; Oxidative stress; Pathogens; Physiology; Proteins; Proteome - metabolism; Proteomes; Proteomic; Proteomics; RNA; Survival; Transcriptome; Transcriptomes; Transcriptomic; United Kingdom > UK; United States > US; RNA-sequencing; Candida; Proteomic; Carbon metabolism; Candida glabrata; Acetate; Liquid chromatography tandem-mass spectrometry; Transcriptomic
• ISSN: 1423-0127; 1021-7770; 1423-0127
• DOI: 10.1186/s12929-020-00700-8

Emergence of Candida glabrata, which causes potential life-threatening invasive candidiasis, has been widely associated with high morbidity and mortality. In order to cause disease in vivo, a robust and highly efficient metabolic adaptation is crucial for the survival of this fungal pathogen in human host. In fact, reprogramming of the carbon metabolism is believed to be indispensable for phagocytosed C. glabrata within glucose deprivation condition during infection.
In this study, the metabolic responses of C. glabrata under acetate growth condition was explored using high-throughput transcriptomic and proteomic approaches.
Collectively, a total of 1482 transcripts (26.96%) and 242 proteins (24.69%) were significantly up- or down-regulated. Both transcriptome and proteome data revealed that the regulation of alternative carbon metabolism in C. glabrata resembled other fungal pathogens such as Candida albicans and Cryptococcus neoformans, with up-regulation of many proteins and transcripts from the glyoxylate cycle and gluconeogenesis, namely isocitrate lyase (ICL1), malate synthase (MLS1), phosphoenolpyruvate carboxykinase (PCK1) and fructose 1,6-biphosphatase (FBP1). In the absence of glucose, C. glabrata shifted its metabolism from glucose catabolism to anabolism of glucose intermediates from the available carbon source. This observation essentially suggests that the glyoxylate cycle and gluconeogenesis are potentially critical for the survival of phagocytosed C. glabrata within the glucose-deficient macrophages.
Here, we presented the first global metabolic responses of C. glabrata to alternative carbon source using transcriptomic and proteomic approaches. These findings implicated that reprogramming of the alternative carbon metabolism during glucose deprivation could enhance the survival and persistence of C. glabrata within the host.