Development of S Haplotype-Specific Markers to Identify Genotypes of Self-Incompatibility in Radish ( Raphanus sativus L.)
Radish ( L.), a root vegetable belonging to the Brassicaceae family, is considered one of the representative crops displaying sporophytic self-incompatibility (SSI). The utilization of a self-incompatibility system in F breeding can improve the efficiency of cross-combinations, leading to a reductio...
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| Published in: | Plants (Basel) Vol. 13; no. 5; p. 725 |
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| Abstract | Radish (
L.), a root vegetable belonging to the Brassicaceae family, is considered one of the representative crops displaying sporophytic self-incompatibility (SSI). The utilization of a self-incompatibility system in F
breeding can improve the efficiency of cross-combinations, leading to a reduction in breeding time and aiding in the development of novel F
varieties. The successful implementation of this system necessitates the rapid and accurate identification of S haplotypes in parental lines. In this study, we identified a total of nine S haplotypes among 22 elite radish lines through Sanger sequencing. Subsequently, we obtained sequences for showing a 95% similarity to nine S haplotypes, along with sequences identified by other researchers using BLAST. Following this, multiple sequence alignment (MSA) was conducted to identify
and
sequence similarities, as well as polymorphisms within the class I and II groups. Subsequently, S haplotype-specific marker sets were developed, targeting polymorphic regions of
and
alleles. These markers successfully amplified each of the nine S haplotypes. These markers will play a crucial role in the rapid and precise identification of parental S haplotypes in the radish F
breeding process, proving instrumental in the radish F
purity test. |
|---|---|
| AbstractList | Radish (Raphanus sativus L.), a root vegetable belonging to the Brassicaceae family, is considered one of the representative crops displaying sporophytic self-incompatibility (SSI). The utilization of a self-incompatibility system in F[sub.1] breeding can improve the efficiency of cross-combinations, leading to a reduction in breeding time and aiding in the development of novel F[sub.1] varieties. The successful implementation of this system necessitates the rapid and accurate identification of S haplotypes in parental lines. In this study, we identified a total of nine S haplotypes among 22 elite radish lines through Sanger sequencing. Subsequently, we obtained sequences for showing a 95% similarity to nine S haplotypes, along with sequences identified by other researchers using BLAST. Following this, multiple sequence alignment (MSA) was conducted to identify SRK and SLG sequence similarities, as well as polymorphisms within the class I and II groups. Subsequently, S haplotype-specific marker sets were developed, targeting polymorphic regions of SRK and SLG alleles. These markers successfully amplified each of the nine S haplotypes. These markers will play a crucial role in the rapid and precise identification of parental S haplotypes in the radish F[sub.1] breeding process, proving instrumental in the radish F[sub.1] purity test. Radish (Raphanus sativus L.), a root vegetable belonging to the Brassicaceae family, is considered one of the representative crops displaying sporophytic self-incompatibility (SSI). The utilization of a self-incompatibility system in F1 breeding can improve the efficiency of cross-combinations, leading to a reduction in breeding time and aiding in the development of novel F1 varieties. The successful implementation of this system necessitates the rapid and accurate identification of S haplotypes in parental lines. In this study, we identified a total of nine S haplotypes among 22 elite radish lines through Sanger sequencing. Subsequently, we obtained sequences for showing a 95% similarity to nine S haplotypes, along with sequences identified by other researchers using BLAST. Following this, multiple sequence alignment (MSA) was conducted to identify SRK and SLG sequence similarities, as well as polymorphisms within the class I and II groups. Subsequently, S haplotype-specific marker sets were developed, targeting polymorphic regions of SRK and SLG alleles. These markers successfully amplified each of the nine S haplotypes. These markers will play a crucial role in the rapid and precise identification of parental S haplotypes in the radish F1 breeding process, proving instrumental in the radish F1 purity test. Radish ( Raphanus sativus L.), a root vegetable belonging to the Brassicaceae family, is considered one of the representative crops displaying sporophytic self-incompatibility (SSI). The utilization of a self-incompatibility system in F 1 breeding can improve the efficiency of cross-combinations, leading to a reduction in breeding time and aiding in the development of novel F 1 varieties. The successful implementation of this system necessitates the rapid and accurate identification of S haplotypes in parental lines. In this study, we identified a total of nine S haplotypes among 22 elite radish lines through Sanger sequencing. Subsequently, we obtained sequences for showing a 95% similarity to nine S haplotypes, along with sequences identified by other researchers using BLAST. Following this, multiple sequence alignment (MSA) was conducted to identify SRK and SLG sequence similarities, as well as polymorphisms within the class I and II groups. Subsequently, S haplotype-specific marker sets were developed, targeting polymorphic regions of SRK and SLG alleles. These markers successfully amplified each of the nine S haplotypes. These markers will play a crucial role in the rapid and precise identification of parental S haplotypes in the radish F 1 breeding process, proving instrumental in the radish F 1 purity test. Radish ( L.), a root vegetable belonging to the Brassicaceae family, is considered one of the representative crops displaying sporophytic self-incompatibility (SSI). The utilization of a self-incompatibility system in F breeding can improve the efficiency of cross-combinations, leading to a reduction in breeding time and aiding in the development of novel F varieties. The successful implementation of this system necessitates the rapid and accurate identification of S haplotypes in parental lines. In this study, we identified a total of nine S haplotypes among 22 elite radish lines through Sanger sequencing. Subsequently, we obtained sequences for showing a 95% similarity to nine S haplotypes, along with sequences identified by other researchers using BLAST. Following this, multiple sequence alignment (MSA) was conducted to identify and sequence similarities, as well as polymorphisms within the class I and II groups. Subsequently, S haplotype-specific marker sets were developed, targeting polymorphic regions of and alleles. These markers successfully amplified each of the nine S haplotypes. These markers will play a crucial role in the rapid and precise identification of parental S haplotypes in the radish F breeding process, proving instrumental in the radish F purity test. |
| Audience | Academic |
| Author | Heo, Seong-Ho Park, Han-Yong Kim, Su-Yeon Mo, Suk-Yeon |
| AuthorAffiliation | 2 Institute of Breeding Research, DASAN Co., Ltd., Pyeongtaek 17864, Republic of Korea 1 Department of Bioresources Engineering, Sejong University, Seoul 05006, Republic of Korea; heosh2409@sju.ac.kr (S.-H.H.); tndus7647@naver.com (S.-Y.K.); ysmo0708@naver.com (S.-Y.M.) |
| AuthorAffiliation_xml | – name: 2 Institute of Breeding Research, DASAN Co., Ltd., Pyeongtaek 17864, Republic of Korea – name: 1 Department of Bioresources Engineering, Sejong University, Seoul 05006, Republic of Korea; heosh2409@sju.ac.kr (S.-H.H.); tndus7647@naver.com (S.-Y.K.); ysmo0708@naver.com (S.-Y.M.) |
| Author_xml | – sequence: 1 givenname: Seong-Ho orcidid: 0009-0006-7767-7812 surname: Heo fullname: Heo, Seong-Ho organization: Institute of Breeding Research, DASAN Co., Ltd., Pyeongtaek 17864, Republic of Korea – sequence: 2 givenname: Su-Yeon surname: Kim fullname: Kim, Su-Yeon organization: Department of Bioresources Engineering, Sejong University, Seoul 05006, Republic of Korea – sequence: 3 givenname: Suk-Yeon surname: Mo fullname: Mo, Suk-Yeon organization: Department of Bioresources Engineering, Sejong University, Seoul 05006, Republic of Korea – sequence: 4 givenname: Han-Yong surname: Park fullname: Park, Han-Yong organization: Department of Bioresources Engineering, Sejong University, Seoul 05006, Republic of Korea |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/38475571$$D View this record in MEDLINE/PubMed |
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| Keywords | self-incompatibility MSA S haplotype radish (Rahpanus sativus L.) |
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L.), a root vegetable belonging to the Brassicaceae family, is considered one of the representative crops displaying sporophytic self-incompatibility... Radish (Raphanus sativus L.), a root vegetable belonging to the Brassicaceae family, is considered one of the representative crops displaying sporophytic... Radish ( Raphanus sativus L.), a root vegetable belonging to the Brassicaceae family, is considered one of the representative crops displaying sporophytic... |
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| SubjectTerms | Amino acids Breeding Daikon Gene expression Genes Genetic aspects Genotypes Glycoproteins Haplotypes Identification Incompatibility Kinases MSA Nucleotide sequence Plant breeding Proteins radish (Rahpanus sativus L.) Radishes Raphanus sativus S haplotype Self-incompatibility Testing |
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| Title | Development of S Haplotype-Specific Markers to Identify Genotypes of Self-Incompatibility in Radish ( Raphanus sativus L.) |
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