A site of vulnerability at V3 crown defined by HIV-1 bNAb M4008_N1

• Published in: Nature communications Vol. 12; no. 1; p. 6464
• Main Authors: Chan, Kun-Wei, Luo, Christina C., Lu, Hong, Wu, Xueling, Kong, Xiang-Peng
• Format: Journal Article
• Language: English
• Published: London Nature Publishing Group UK 09-11-2021; Nature Publishing Group; Nature Portfolio
• Subjects: 101/28; 13/1; 631/250/2152; 631/45/535; 631/535/1258/1259; 82/83; AIDS Vaccines - therapeutic use; Antibodies; Antibodies, Neutralizing - immunology; Antibodies, Neutralizing - metabolism; Broadly Neutralizing Antibodies - immunology; Broadly Neutralizing Antibodies - metabolism; Design; Epitope mapping; Glycoprotein gp120; HIV; HIV Antibodies - immunology; HIV Antibodies - metabolism; HIV-1 - metabolism; Human immunodeficiency virus; Humanities and Social Sciences; Humans; Immunogenicity; multidisciplinary; Neutralizing; Polysaccharides; Science; Science (multidisciplinary); Trimers; Vaccines
• ISSN: 2041-1723; 2041-1723
• DOI: 10.1038/s41467-021-26846-z

Identification of vulnerable sites defined by broadly neutralizing antibodies (bNAbs) on HIV-1 envelope (Env) is crucial for vaccine design, and we present here a vulnerable site defined by bNAb M4008_N1, which neutralizes about 40% of a tier-2 virus panel. A 3.2 Å resolution cryo-EM structure of M4008_N1 in complex with BG505 DS-SOSIP reveals a large, shallow protein epitope surface centered at the V3 crown of gp120 and surrounded by key glycans. M4008_N1 interacts with gp120 primarily through its hammerhead CDR H3 to form a β-sheet interaction with the V3 crown hairpin. This makes M4008_N1 compatible with the closed conformation of the prefusion Env trimer, and thus distinct from other known V3 crown mAbs. This mode of bNAb approaching the immunogenic V3 crown in the native Env trimer suggests a strategy for immunogen design targeting this site of vulnerability.
Mapping of the HIV Env surface epitopes targeted by broadly neutralizing antibodies (bNAbs) is of great interest for HIV-1 vaccine design. Here, the authors present the 3.2 Å cryo-EM structure of the bNAb M4008_N1 in complex with BG505 DS-SOSIP, an engineered native-like Env trimer and observe that the bNAb epitope is centered at the V3 crown and that M4008_N1 uses its CDR H3 to form an extended β-sheet with the β-hairpin of the V3 crown in a conformation stabilized in the prefusion trimer.