Differential Contributions of mSWI/SNF Chromatin Remodeler Sub-Families to Myoblast Differentiation

• Published in: International journal of molecular sciences Vol. 24; no. 14; p. 11256
• Main Authors: Padilla-Benavides, Teresita, Olea-Flores, Monserrat, Sharma, Tapan, Syed, Sabriya A, Witwicka, Hanna, Zuñiga-Eulogio, Miriam D, Zhang, Kexin, Navarro-Tito, Napoleon, Imbalzano, Anthony N
• Format: Journal Article
• Language: English
• Published: Switzerland MDPI AG 09-07-2023; MDPI
• Subjects: Animals; Baf250A; Brd9; Cell cycle; Chromatin; Chromatin Assembly and Disassembly - genetics; Chromosomal Proteins, Non-Histone - genetics; Chromosomal Proteins, Non-Histone - metabolism; Enzymes; Gene expression; gene regulation; Genes; Genomes; Humans; Kinases; Mammals - metabolism; Musculoskeletal system; Myoblasts - metabolism; Myogenesis; myogenin; Proteins; Roles; SWI/SNF; gene regulation; myogenin; SWI/SNF; chromatin remodeling; Brd9; myogenesis; Baf250A
• ISSN: 1422-0067; 1661-6596; 1422-0067
• DOI: 10.3390/ijms241411256

Mammalian SWI/SNF (mSWI/SNF) complexes are ATP-dependent chromatin remodeling enzymes that are critical for normal cellular functions. mSWI/SNF enzymes are classified into three sub-families based on the presence of specific subunit proteins. The sub-families are Brm- or Brg1-associated factor (BAF), ncBAF (non-canonical BAF), and polybromo-associated BAF (PBAF). The biological roles for the different enzyme sub-families are poorly described. We knocked down the expression of genes encoding unique subunit proteins for each sub-family,
,
, and
, which mark the BAF, ncBAF, and PBAF sub-families, respectively, and examined the requirement for each in myoblast differentiation. We found that Baf250A and the BAF complex were required to drive lineage-specific gene expression. KD of
delayed differentiation. However, while the Baf250A-dependent gene expression profile included myogenic genes, the Brd9-dependent gene expression profile did not, suggesting Brd9 and the ncBAF complex indirectly contributed to differentiation. Baf180 was dispensable for myoblast differentiation. The results distinguish between the roles of the mSWI/SNF enzyme sub-families during myoblast differentiation.