Ribosomal Protein S12 Hastens Nucleation of Co-Transcriptional Ribosome Assembly

• Published in: Biomolecules (Basel, Switzerland) Vol. 13; no. 6; p. 951
• Main Authors: Rodgers, Margaret L, Sun, Yunsheng, Woodson, Sarah A
• Format: Journal Article
• Language: English
• Published: Switzerland MDPI AG 06-06-2023; MDPI
• Subjects: Analysis; Binding sites; co-transcriptional RNA folding; Genomics; Glucose; Labeling; Microscopy; Nucleation; Proteins; Ribosomal protein S12; Ribosomal proteins; Ribosomal Proteins - metabolism; Ribosomal subunits; ribosome assembly; Ribosomes - metabolism; RNA; RNA chaperones; RNA polymerase; RNA, Ribosomal - genetics; RNA, Ribosomal, 16S - genetics; rRNA 16S; single-molecule fluorescence; Transcription; United States; United States > US; ribosomal protein S12; RNA chaperones; ribosome assembly; single-molecule fluorescence; co-transcriptional RNA folding
• ISSN: 2218-273X; 2218-273X
• DOI: 10.3390/biom13060951

Ribosomal subunits begin assembly during transcription of the ribosomal RNA (rRNA), when the rRNA begins to fold and associate with ribosomal proteins (RPs). In bacteria, the first steps of ribosome assembly depend upon recognition of the properly folded rRNA by primary assembly proteins such as S4, which nucleates assembly of the 16S 5' domain. Recent evidence, however, suggests that initial recognition by S4 is delayed due to variable folding of the rRNA during transcription. Here, using single-molecule colocalization co-transcriptional assembly (smCoCoA), we show that the late-binding RP S12 specifically promotes the association of S4 with the pre-16S rRNA during transcription, thereby accelerating nucleation of 30S ribosome assembly. Order of addition experiments suggest that S12 helps chaperone the rRNA during transcription, particularly near the S4 binding site. S12 interacts transiently with the rRNA during transcription and, consequently, a high concentration is required for its chaperone activity. These results support a model in which late-binding RPs moonlight as RNA chaperones during transcription in order to facilitate rapid assembly.