Genome Annotation and Curation Using MAKER and MAKER-P

Genome Annotation and Curation Using MAKER and MAKER-P

This unit describes how to use the genome annotation and curation tools MAKER and MAKER-P to annotate protein-coding and noncoding RNA genes in newly assembled genomes, update/combine legacy annotations in light of new evidence, add quality metrics to annotations from other pipelines, and map existi...

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Bibliographic Details
Published in:Current protocols in bioinformatics Vol. 48; p. 4.11.1
Main Authors: Campbell, Michael S, Holt, Carson, Moore, Barry, Yandell, Mark
Format: Journal Article
Language:English
Published: United States 12-12-2014
Subjects:
Genome, Human
Humans
Software
gene finding
genome annotation
plants
comparative genomics
Online Access:Get more information
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Description
Summary:This unit describes how to use the genome annotation and curation tools MAKER and MAKER-P to annotate protein-coding and noncoding RNA genes in newly assembled genomes, update/combine legacy annotations in light of new evidence, add quality metrics to annotations from other pipelines, and map existing annotations to a new assembly. MAKER and MAKER-P can rapidly annotate genomes of any size, and scale to match available computational resources.
ISSN:1934-340X
DOI:10.1002/0471250953.bi0411s48