Phylogenetic and Structure-Function Analyses of ENA ATPases: A Case Study of the ENA1 Protein from the Fungus Neurospora crassa

• Published in: International journal of molecular sciences Vol. 25; no. 1; p. 514
• Main Authors: Aguilella, Marcos, Garciadeblás, Blanca, Fernández Pacios, Luis, Benito, Begoña
• Format: Journal Article
• Language: English
• Published: Switzerland MDPI AG 30-12-2023; MDPI
• Subjects: Alphafold2; Amino acids; ENA ATPases; Endoplasmic reticulum; Flowers & plants; Fungi; Genomes; Na+ transporters; Neurospora crassa; Organisms; Phosphorylation; Phylogenetics; phylogeny; Proteins; Yeast; phylogeny; Neurospora crassa; Alphafold2; Na+ transporters; ENA ATPases
• ISSN: 1422-0067; 1661-6596; 1422-0067
• DOI: 10.3390/ijms25010514

ENA transporters are a group of P-type ATPases that are characterized by actively moving Na
or K
out of the cell against their concentration gradient. The existence of these transporters was initially attributed to some fungi, although more recently they have also been identified in mosses, liverworts, and some protozoa. Given the current increase in the number of organisms whose genomes are completely sequenced, we set out to expand our knowledge about the existence of ENA in organisms belonging to other phylogenetic groups. For that, a hidden Markov model profile was constructed to identify homologous sequences to ENA proteins in protein databases. This analysis allowed us to identify the existence of ENA-type ATPases in the most primitive groups of fungi, as well as in other eukaryotic organisms not described so far. In addition, this study has allowed the identification of a possible new group of P-ATPases, initially proposed as ENA but which maintain phylogenetic distances with these proteins. Finally, this work has also addressed this study of the structure of ENA proteins, which remained unknown due to the lack of crystallographic data. For this purpose, a 3D structure prediction of the NcENA1 protein of the fungus
was performed using AlphaFold2 software v2.3.1. From this structure, the electrostatic potential of the protein was analyzed. With all these data, the protein regions and the amino acids involved in the transport of Na
or K
ions across the membrane were proposed for the first time. Targeted mutagenesis of some of these residues has confirmed their relevant participation in the transport function of ENA proteins.