Application of wastewater-based surveillance and copula time-series model for COVID-19 forecasts

• Published in: The Science of the total environment Vol. 885; p. 163655
• Main Authors: Jeng, Hueiwang Anna, Singh, Rekha, Diawara, Norou, Curtis, Kyle, Gonzalez, Raul, Welch, Nancy, Jackson, Cynthia, Jurgens, David, Adikari, Sasanka
• Format: Journal Article
• Language: English
• Published: Netherlands Elsevier B.V 10-08-2023
• Subjects: Animals; Copula; COVID-19 - epidemiology; Cubozoa; SARS-CoV-2; Time Factors; Time series; Wastewater; Wastewater SARS CoV-2 viral load; Wastewater-Based Epidemiological Monitoring; Wastewater SARS CoV-2 viral load; Copula; Time series
• ISSN: 0048-9697; 1879-1026; 1879-1026
• DOI: 10.1016/j.scitotenv.2023.163655

The objective of this study was to develop a novel copula-based time series (CTS) model to forecast COVID-19 cases and trends based on wastewater SARS-CoV-2 viral load and clinical variables. Wastewater samples were collected from wastewater pumping stations in five sewersheds in the City of Chesapeake VA. Wastewater SARS-CoV-2 viral load was measured using reverse transcription droplet digital PCR (RT-ddPCR). The clinical dataset included daily COVID-19 reported cases, hospitalization cases, and death cases. The CTS model development included two steps: an autoregressive moving average (ARMA) model for time series analysis (step I), and an integration of ARMA and a copula function for marginal regression analysis (step II). Poisson and negative binomial marginal probability densities for copula functions were used to determine the forecasting capacity of the CTS model for COVID-19 forecasts in the same geographical area. The dynamic trends predicted by the CTS model were well suited to the trend of the reported cases as the forecasted cases from the CTS model fell within the 99 % confidence interval of the reported cases. Wastewater SARS CoV-2 viral load served as a reliable predictor for forecasting COVID-19 cases. The CTS model provided robust modeling to predict COVID-19 cases.
•Wastewater SARS-CoV-2 viral load can serve as a predictor for forecasting COVID-19 cases.•The relationship between wastewater SARS-CoV-2 viral load and COVID-19 cases was not linear.•The autoregression moving average model can depict the time-seies distributions of COVID-19 cases.•The newly copula-based time series model can forecast COVID-19 cases effectively.