Biophysical tools to study the oligomerization dynamics of Prx1-class peroxiredoxins

• Published in: Biophysical reviews Vol. 15; no. 4; pp. 601 - 609
• Main Authors: Villar, Sebastián F., Möller, Matías N., Denicola, Ana
• Format: Journal Article
• Language: English
• Published: Berlin/Heidelberg Springer Berlin Heidelberg 01-08-2023; Springer Nature B.V
• Subjects: Anisotropy; Biochemistry; Biological and Medical Physics; Biological Techniques; Biomedical and Life Sciences; Biophysics; Calorimetry; Cell Biology; Cysteine; Hydrogen peroxide; Life Sciences; Lipid peroxidation; Lipids; Membrane Biology; Molecular weight; Nanotechnology; Oligomerization; Peroxidase; Peroxiredoxin; Peroxynitrous acid; Photometry; Protein structure; Quaternary structure; Reductases; Review; Size exclusion chromatography; Substrates; Sulfenic acid; Thioredoxin; Ultracentrifugation; SEC; Phasors; Oligomerization; Anisotropy; Lifetime fluorescence; Quaternary structure; Peroxiredoxins; AUC
• ISSN: 1867-2450; 1867-2469
• DOI: 10.1007/s12551-023-01076-3

Peroxiredoxins (Prx) are ubiquitous, highly conserved peroxidases whose activity depends on catalytic cysteine residues. The Prx1-class of the peroxiredoxin family, also called typical 2-Cys Prx, organize as head-to-tail homodimers containing two active sites. The peroxidatic cysteine C
P
of one monomer reacts with the peroxide substrate to form sulfenic acid that reacts with the resolving cysteine (C
R
) of the adjacent subunit to form an intermolecular disulfide, that is reduced back by the thioredoxin/thioredoxin reductase/NADPH system. Although the minimal catalytic unit is the dimer, these Prx oligomerize into (do)decamers. In addition, these ring-shaped decamers can pile-up into high molecular weight structures. Prx not only display peroxidase activity reducing H
2
O
2
, peroxynitrous acid and lipid hydroperoxides (antioxidant enzymes), but also exhibit holdase activity protecting other proteins from unfolding (molecular chaperones). Highly relevant is their participation in redox cellular signaling that is currently under active investigation. The different activities attributed to Prx are strongly ligated to their quaternary structure. In this review, we will describe different biophysical approaches used to characterize the oligomerization dynamics of Prx that include the classical size-exclusion chromatography, analytical ultracentrifugation, calorimetry, and also fluorescence anisotropy and lifetime measurements, as well as mass photometry.