The change of conditions does not affect Ros87 downhill folding mechanism

• Published in: Scientific reports Vol. 10; no. 1; p. 21067
• Main Authors: Grazioso, Rinaldo, García-Viñuales, Sara, D’Abrosca, Gianluca, Baglivo, Ilaria, Pedone, Paolo Vincenzo, Milardi, Danilo, Fattorusso, Roberto, Isernia, Carla, Russo, Luigi, Malgieri, Gaetano
• Format: Journal Article
• Language: English
• Published: London Nature Publishing Group UK 03-12-2020; Nature Publishing Group
• Subjects: 639/638/45/321; 639/638/45/470; 639/638/45/49; 639/638/45/535; 639/638/45/612; Amino acid sequence; Bacterial Proteins - chemistry; Bacterial Proteins - metabolism; Cadmium; Humanities and Social Sciences; Ionic strength; Metal ions; Models, Molecular; multidisciplinary; NMR; Nuclear magnetic resonance; Nuclear Magnetic Resonance, Biomolecular; Protein families; Protein Folding; Protein Unfolding; Proteins; Proteolysis; Science; Science (multidisciplinary); Thermodynamics; Zinc finger proteins
• ISSN: 2045-2322; 2045-2322
• DOI: 10.1038/s41598-020-78008-8

Downhill folding has been defined as a unique thermodynamic process involving a conformations ensemble that progressively loses structure with the decrease of protein stability. Downhill folders are estimated to be rather rare in nature as they miss an energetically substantial folding barrier that can protect against aggregation and proteolysis. We have previously demonstrated that the prokaryotic zinc finger protein Ros87 shows a bipartite folding/unfolding process in which a metal binding intermediate converts to the native structure through a delicate barrier-less downhill transition. Significant variation in folding scenarios can be detected within protein families with high sequence identity and very similar folds and for the same sequence by varying conditions. For this reason, we here show, by means of DSC, CD and NMR, that also in different pH and ionic strength conditions Ros87 retains its partly downhill folding scenario demonstrating that, at least in metallo-proteins, the downhill mechanism can be found under a much wider range of conditions and coupled to other different transitions. We also show that mutations of Ros87 zinc coordination sphere produces a different folding scenario demonstrating that the organization of the metal ion core is determinant in the folding process of this family of proteins.