Stable MSAP Markers for the Distinction of Vitis vinifera cv Pinot Noir Clones

• Published in: Molecular biotechnology Vol. 55; no. 3; pp. 236 - 248
• Main Authors: Ocaña, Juan, Walter, Bernard, Schellenbaum, Paul
• Format: Journal Article
• Language: English
• Published: Boston Springer-Verlag 01-11-2013; Springer US; Springer Nature B.V; Springer
• Subjects: Agricultural biotechnology; amplified fragment length polymorphism; Amplified Fragment Length Polymorphism Analysis; Biochemistry; Biological Techniques; Biotechnology; Cell Biology; Chemistry; Chemistry and Materials Science; Clone Cells; clones; Cloning; Cultivars; DNA Methylation; Economic importance; Epigenesis, Genetic; epigenetics; Evolution, Molecular; Fruit crops; Genes, Plant; Genetic Markers; Genetic Variation; genome; Genome, Plant; Human Genetics; Life Sciences; Microsatellite Repeats; Other; Phylogeny; Polymorphism; Polymorphism, Genetic; Protein Science; Studies; Vitis - classification; Vitis - genetics; Vitis vinifera; Wines; France; Pinot noir; Grapevine; Stable polymorphism; DNA methylation; Unstable polymorphism; Epigenetic; PIC; Clonal variation
• ISSN: 1073-6085; 1559-0305
• DOI: 10.1007/s12033-013-9675-3

Grapevine is one of the most economically important fruit crops. Molecular markers have been used to study grapevine diversity. For instance, simple sequence repeats are a powerful tool for identification of grapevine cultivars, while amplified fragment length polymorphisms have shown their usefulness in intra-varietal diversity studies. Other techniques such as sequence-specific amplified polymorphism are based on the presence of mobile elements in the genome, but their detection lies upon their activity. Relevant attention has been drawn toward epigenetic sources of variation. In this study, a set of Vitis vinifera cv Pinot noir clones were analyzed using the methylation-sensitive amplified polymorphism technique with isoschizomers MspI and HpaII. Nine out of fourteen selective primer combinations were informative and generated two types of polymorphic fragments which were categorized as “stable” and “unstable.” In total, 23 stable fragments were detected and they discriminated 92.5 % of the studied clones. Detected stable polymorphisms were either common to several clones, restricted to a few clones or unique to a single clone. The identification of these stable epigenetic markers will be useful in clonal diversity studies. We highlight the relevance of stable epigenetic variation in V. vinifera clones and analyze at which level these markers could be applicable for the development of forthright techniques for clonal distinction.