CS-PSeq-Gen: Simulating the evolution of protein sequence under constraints

• Published in: Bioinformatics Vol. 18; no. 7; pp. 1015 - 1016
• Main Author: TUFFERY, P
• Format: Journal Article
• Language: English
• Published: Oxford Oxford University Press 01-07-2002
• Subjects: Amino Acid Sequence; Bacterial diseases; Bacteriology; Biological and medical sciences; Cluster Analysis; Computer Simulation; Databases, Protein; Experimental bacterial diseases and models; Fundamental and applied biological sciences. Psychology; General aspects; Genetics; Infectious diseases; Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects); Medical sciences; Microbiology; Models, Genetic; Models, Molecular; Models, Statistical; Molecular Sequence Data; Normal Distribution; Phylogeny; Proteins - chemistry; Proteins - genetics; Sensitivity and Specificity; Sequence Analysis, Protein - methods; Software; Statistics as Topic; Computer program; Simulation; Classification; Evolution; Bioinformatics; Molecular domain; Aminoacid sequence
• ISSN: 1367-4803; 1460-2059; 1367-4811
• DOI: 10.1093/bioinformatics/18.7.1015

CS-PSeq-Gen is a program derived from PSeq-Gen, designed to perform simulations of the evolution of protein sequences under the constraints of a reconstructed phylogeny. It also provides a basis for the investigation of the correlated evolution of sites. Availability: http://condor.urbb.jussieu.fr/CS-PSeq-Gen.html Contact: [e-mail]