Federated Learning of Electronic Health Records to Improve Mortality Prediction in Hospitalized Patients With COVID-19: Machine Learning Approach

• Published in: JMIR medical informatics Vol. 9; no. 1; p. e24207
• Main Authors: Vaid, Akhil, Jaladanki, Suraj K, Xu, Jie, Teng, Shelly, Kumar, Arvind, Lee, Samuel, Somani, Sulaiman, Paranjpe, Ishan, De Freitas, Jessica K, Wanyan, Tingyi, Johnson, Kipp W, Bicak, Mesude, Klang, Eyal, Kwon, Young Joon, Costa, Anthony, Zhao, Shan, Miotto, Riccardo, Charney, Alexander W, Böttinger, Erwin, Fayad, Zahi A, Nadkarni, Girish N, Wang, Fei, Glicksberg, Benjamin S
• Format: Journal Article
• Language: English
• Published: Canada JMIR Publications 27-01-2021
• Subjects: Cardiovascular disease; Coronaviruses; COVID-19; Demographics; Electronic health records; Hospitals; Machine learning; Medical research; Mortality; Multimedia; Original Paper; Patients; COVID-19; electronic health records; machine learning; federated learning
• ISSN: 2291-9694; 2291-9694
• DOI: 10.2196/24207

Machine learning models require large datasets that may be siloed across different health care institutions. Machine learning studies that focus on COVID-19 have been limited to single-hospital data, which limits model generalizability.
We aimed to use federated learning, a machine learning technique that avoids locally aggregating raw clinical data across multiple institutions, to predict mortality in hospitalized patients with COVID-19 within 7 days.
Patient data were collected from the electronic health records of 5 hospitals within the Mount Sinai Health System. Logistic regression with L1 regularization/least absolute shrinkage and selection operator (LASSO) and multilayer perceptron (MLP) models were trained by using local data at each site. We developed a pooled model with combined data from all 5 sites, and a federated model that only shared parameters with a central aggregator.
The LASSO
model outperformed the LASSO
model at 3 hospitals, and the MLP
model performed better than the MLP
model at all 5 hospitals, as determined by the area under the receiver operating characteristic curve. The LASSO
model outperformed the LASSO
model at all hospitals, and the MLP
model outperformed the MLP
model at 2 hospitals.
The federated learning of COVID-19 electronic health record data shows promise in developing robust predictive models without compromising patient privacy.