Genetic diversity analysis of buffalo fatty acid synthase (FASN) gene and its differential expression among bovines

• Published in: Gene Vol. 575; no. 2; pp. 506 - 512
• Main Authors: Niranjan, S.K., Goyal, S., Dubey, P.K., Kumari, N., Mishra, S.K., Mukesh, M., Kataria, R.S.
• Format: Journal Article
• Language: English
• Published: Netherlands Elsevier B.V 10-01-2016
• Subjects: Alternate splicing; Alternative Splicing; Amino Acid Sequence; Animals; Binding Sites; Bubalus bubalis; Buffaloes - classification; Buffaloes - genetics; Cattle; Conserved Sequence; Expression analysis; Fatty acid synthase; Fatty Acid Synthases - chemistry; Fatty Acid Synthases - genetics; Female; Male; Phylogeny; Polymorphism; Polymorphism, Single Nucleotide; RNA, Messenger - metabolism; Species Specificity; Thioesterase domain; Thioesterase domain; TE; Expression analysis; FASN; Alternate splicing; Fatty acid synthase; GAPDH; Bubalus bubalis; PCA; Polymorphism
• ISSN: 0378-1119; 1879-0038
• DOI: 10.1016/j.gene.2015.09.020

Fatty Acid Synthase (FASN) gene seems to be structurally and functionally different in bovines in view of their distinctive fatty acid synthesis process. Structural variation and differential expression of FASN gene is reported in buffalo (Bubalus bubalis), a bovine species close to cattle, in this study. Amino acid sequence and phylogenetic analysis of functionally important thioesterase (TE) domain of FASN revealed its conserved nature across mammals. Amino acid residues at TE domain, responsible for substrate binding and processing, were found to be invariant in all the mammalian species. A total of seven polymorphic nucleotide sites, including two in coding region of TE domain were identified across the 10 buffalo populations of riverine and swamp types. G and C alleles were found almost fixed at g18996 and g19056 loci, respectively in riverine buffaloes. Principal component analysis of three SNPs (g18433, g18996 and g19056) revealed distinct classification of riverine and swamp buffalo populations. Reverse Transcription-PCR amplification of mRNA corresponding to exon 8–10 region of buffalo FASN helped in identification of two transcript variants; one transcript of 565 nucleotides and another alternate transcript of 207 nucleotides, seems to have arisen through alternative splicing. Both the transcripts were found to be expressed in most of the vital tissues of buffalo with the highest expression in mammary gland. Semi-quantitative and real-time expression analysis across 13 different buffalo tissues revealed its highest expression in lactating mammary gland. When compared, expression of FASN was also found to be higher in liver, adipose and skeletal muscle of buffalo tissues, than cattle. However, the FASN expression was highest in adipose among the three tissues in both the species. Results indicate structural and functional distinctiveness of bovine FASN. Presence of alternate splicing in buffalo FASN also seems to be a unique phenomenon to the bovines, probably associated with mRNA based regulation of the biological functions of FASN in these species.
•Substantial polymorphism observed across thioesterase domain of buffalo FASN.•Allele frequencies of SNPs varied significantly among riverine and swamp buffaloes.•Alternate spliced transcripts' levels of buffalo FASN varied across tissues.•Buffalo mammary gland showed highest expression of FASN.•Higher FASN expression in various tissues of buffalo than that of cattle was observed.