Diversity of soil mycobacterium isolates from three sites that degrade polycyclic aromatic hydrocarbons

• Published in: Journal of applied microbiology Vol. 102; no. 6; pp. 1612 - 1624
• Main Authors: Miller, C.D, Child, R, Hughes, J.E, Benscai, M, Der, J.P, Sims, R.C, Anderson, A.J
• Format: Journal Article
• Language: English
• Published: Oxford, UK Oxford, UK : Blackwell Publishing Ltd 01-06-2007; Blackwell Publishing Ltd; Blackwell Science
• Subjects: Anti-Bacterial Agents - pharmacology; Base Sequence; Biodegradation, Environmental; Biodiversity; Biofilms - growth & development; Biological and medical sciences; Cell Wall - physiology; Culture Media; DNA, Bacterial - genetics; DNA, Intergenic - genetics; Fundamental and applied biological sciences. Psychology; Genes, Bacterial - genetics; Genome, Bacterial - genetics; genomics; linear plasmids; Microbiology; Molecular Sequence Data; mycobacteria; Mycobacterium - drug effects; Mycobacterium - genetics; Mycobacterium - metabolism; Mycobacterium gilvum; Mycobacterium vanbaalenii; Phylogeny; Plankton; polycyclic aromatic hydrocarbons; Polycyclic Aromatic Hydrocarbons - metabolism; RNA, Bacterial - genetics; RNA, Ribosomal, 16S - genetics; Soil Microbiology; Mycobacterium; Hydrocarbon; Applied microbiology; Genomics; Diversity; Polycyclic aromatic compound; polycyclic aromatic hydrocarbons; mycobacteria; Degradation; Plasmid; Soils; linear plasmids; Mycobacteriales; Mycobacteriaceae; Bacteria; Isolate; Actinomycetes
• ISSN: 1364-5072; 1365-2672
• DOI: 10.1111/j.1365-2672.2006.03202.x

This paper investigates the diversity of polycyclic aromatic hydrocarbon (PAH)-degrading mycobacterium isolates from three different sites within United States: Montana, Texas and Indiana. All five mycobacterium isolates differed in chromosomal restriction enzyme-fragmentation patterns; three isolates possessed linear plasmids. The DNA sequence between the murA and rRNA genes were divergent but the sequence upstream of nidBA genes, encoding a dioxygenase involved in pyrene oxidation, was more highly conserved. Long-chain fatty acid analysis showed most similarity between three isolates from the same Montana site. All isolates were sensitive to rifampicin and isoniazid, used in tuberculosis treatment, and to syringopeptins, produced by plant-associated pseudomonads. Biofilm growth was least for isolate MCS that grew on plate medium as rough-edged colonies. The patterns of substrate utilization in Biolog plates showed clustering of the Montana isolates compared with Mycobacterium vanbaalenii and Mycobacterium gilvum. The five PAH-degrading mycobacterium isolates studied differ in genetic and biochemical properties. Different properties with respect to antibiotic susceptibility, substrate utilization and biofilm formation could influence the survival in soil of the microbe and their suitability for use in bioaugmentation.