A phosphorylation-dependent switch in the disordered p53 transactivation domain regulates DNA binding

• Published in: Proceedings of the National Academy of Sciences - PNAS Vol. 118; no. 1; pp. 1 - 10
• Main Authors: Sun, Xun, Dyson, H. Jane, Wright, Peter E.
• Format: Journal Article
• Language: English
• Published: United States National Academy of Sciences 05-01-2021
• Subjects: Binding; Binding Sites; Biological Sciences; Cooperativity; Damage; Deoxyribonucleic acid; Dimerization; Dimers; DNA; DNA - chemistry; DNA damage; DNA-Binding Proteins - chemistry; DNA-Binding Proteins - genetics; Domains; Fluorescence; Fluorescence Polarization; Fluorescence spectroscopy; Gene Expression; Kinases; Magnetic Resonance Spectroscopy; Mutation; NMR; Nuclear magnetic resonance; p53 Protein; Phosphorylation; Proline; Proline-Rich Protein Domains; Protein Binding; Protein Domains; Protein Processing, Post-Translational; Recombinant Proteins; Sequence Deletion; Spectrometry, Fluorescence; Transcription termination; Tumor Suppressor Protein p53 - chemistry; Tumor Suppressor Protein p53 - genetics; intramolecular interaction; intrinsically disordered protein; cooperative dissociation; p53 regulation; posttranslational modification
• ISSN: 0027-8424; 1091-6490
• DOI: 10.1073/pnas.2021456118

The tumor-suppressor p53 is a critical regulator of the cellular response to DNA damage and is tightly regulated by posttranslational modifications. Thr55 in the AD2 interaction motif of the N-terminal transactivation domain functions as a phosphorylation-dependent regulatory switch that modulates p53 activity. Thr55 is constitutively phosphorylated, becomes dephosphorylated upon DNA damage, and is subsequently rephosphorylated to facilitate dissociation of p53 from promoters and inactivate p53-mediated transcription. Using NMR and fluorescence spectroscopy, we show that Thr55 phosphorylation inhibits DNA-binding by enhancing competitive interactions between the disordered AD2 motif and the structured DNA-binding domain (DBD). Nonphosphorylated p53 exhibits positive cooperativity in binding DNA as a tetramer. Upon phosphorylation of Thr55, cooperativity is abolished and p53 binds initially to cognate DNA sites as a dimer. As the concentration of phosphorylated p53 is further increased, a second dimer binds and causes p53 to dissociate from the DNA, resulting in a bell-shaped binding curve. This autoinhibition is driven by favorable interactions between the DNA-binding surface of the DBD and the multiple phosphorylated AD2 motifs within the tetramer. These interactions are augmented by additional phosphorylation of Ser46 and are fine-tuned by the proline-rich domain (PRD). Removal of the PRD strengthens the AD2–DBD interaction and leads to autoinhibition of DNA binding even in the absence of Thr55 phosphorylation. This study reveals the molecular mechanism by which the phosphorylation status of Thr55 modulates DNA binding and controls both activation and termination of p53-mediated transcriptional programs at different stages of the cellular DNA damage response.