Elucidation of the molecular interactions that enable stable assembly and structural diversity in multicomponent immune receptors

• Published in: Proceedings of the National Academy of Sciences - PNAS Vol. 118; no. 26; pp. 1 - 8
• Main Authors: Fong, Lam-Kiu, Chalkley, Matthew J., Tan, Sophia K., Grabe, Michael, DeGrado, William F.
• Format: Journal Article
• Language: English
• Published: United States National Academy of Sciences 29-06-2021
• Subjects: Amino Acid Motifs; Biological Sciences; Clustering; Combinatorial analysis; Coordination compounds; DAP12 protein; Data search; Databases, Protein; Density functional theory; Fasteners; Helices; Hydrogen bonding; Molecular dynamics; Molecular interactions; Mutation - genetics; Physical Sciences; Protein Binding; Protein Conformation; Protein Stability; Protonation; Receptors; Receptors, Immunologic - chemistry; Receptors, Immunologic - metabolism; Residues; Signaling; Transmembrane domains; transmembrane helix assembly; salt bridge; immune receptor; carboxyl-carboxylate pair; simulation
• ISSN: 0027-8424; 1091-6490
• DOI: 10.1073/pnas.2026318118

Multicomponent immune receptors are essential complexes in which distinct ligand-recognition and signaling subunits are held together by interactions between acidic and basic residues of their transmembrane helices. A 2:1 acidic-to-basic motif in the transmembrane domains of the subunits is necessary and sufficient to assemble these receptor complexes. Here, we study a prototype for these receptors, a DAP12-NKG2C 2:1 heterotrimeric complex, in which the two DAP12 subunits each contribute a single transmembrane Asp residue, and the NKG2C subunit contributes a Lys to form the complex. DAP12 can also associate with 20 other subunits using a similar motif. Here, we use molecular-dynamics simulations to understand the basis for the high affinity and diversity of interactions in this group of receptors. Simulations of the transmembrane helices with differing protonation states of the Asp-Asp-Lys triad identified a structurally stable interaction in which a singly-protonated Asp-Asp pair forms a hydrogen-bonded carboxyl-carboxylate clamp that clasps onto a charged Lys side chain. This polar motif was also supported by density functional theory and a Protein Data Bank–wide search. In contrast, the helices are dynamic at sites distal to the stable carboxyl-carboxylate clamp motif. Such a locally stable but globally dynamic structure is well suited to accommodate the sequence and structural variations in the transmembrane helices of multicomponent receptors, which mix and match subunits to create combinatorial functional diversity from a limited number of subunits. It also supports a signaling mechanism based on multisubunit clustering rather than propagation of rigid conformational changes through the membrane.