Linc00996 is a favorable prognostic factor in LUAD: Results from bioinformatics analysis and experimental validation

• Published in: Frontiers in genetics Vol. 13; p. 932973
• Main Authors: Shen, Zhenghai, Li, Xin, Hu, Zaoxiu, Yang, Yanlong, Yang, Zhenghong, Li, Shanshan, Zhou, Yongchun, Ma, Jie, Li, Hongsheng, Liu, Xi, Cai, Jingjing, Pu, Lisa, Wang, Xiaoxiong, Huang, Yunchao
• Format: Journal Article
• Language: English
• Published: Frontiers Media S.A 02-09-2022
• Subjects: bioinformatics; Genetics; Linc00996; lncRNA; LUAD; prognosis
• ISSN: 1664-8021; 1664-8021
• DOI: 10.3389/fgene.2022.932973

Background:
Linc00996 has been reported in a variety of malignant tumors, but its potential role and significance in lung adenocarcinoma (LUAD) are not fully understood. The authors investigated the expression and biological behavior of Linc00996 in LUAD and elucidated the function of its potential target genes.
Materials and methods:
The data of Linc00996 expression in cancers were derived from GEPIA. GEO and TCGA datasets were used to identify the differential expression of Linc00996 in LUAD and analyze the respective correlation between different expression levels and LUAD stage and survival prognosis. We further elucidated the potential biological processes and pathways involved with Linc00996 in LAUD by GSEA. ssGSEA was applied to explore the relationship between Linc00996 and immune activity. Finally, the clinical impact of Linc00996 was assessed in 61 patients with LUAD, and the biological functions of Linc00996 were determined by a series of experiments
in vitro
, such as CCK8, colony formation, migration, and invasion assays.
Results:
Compared with adjacent normal lung tissues, Linc00996 was significantly downregulated in LUAD, and its expression was negatively correlated with T stage, N stage, and pathological stage. An
in vitro
study suggested that enhanced Linc00996 expression could inhibit cell proliferation, clonal formation, migration, and invasion in LUAD cell lines. Via GSEA and ssGSEA, we observed that Linc00996 might be connected with immune infiltration in LUAD, and Linc00996 might inhibit tumorigenesis and metastasis by regulating antigen processing and presentation, JAK-STAT3, and cell adhesion molecular signaling pathways.
Conclusion:
Linc00996 is a novel tumor suppressor in LUAD and may suppress the tumorigenesis and metastasis of LUAD via the tumor-related signaling pathway, such as antigen processing and presentation, JAK-STAT3, and cell adhesion molecular signaling pathways.