In-house validation of a multiplex real-time PCR method for simultaneous detection of Salmonella spp., Escherichia coli O157 and Listeria monocytogenes

• Published in: International journal of food microbiology Vol. 164; no. 1; pp. 92 - 98
• Main Authors: Garrido, Alejandro, Chapela, María-José, Román, Belén, Fajardo, Paula, Vieites, Juan M., Cabado, Ana G.
• Format: Journal Article
• Language: English
• Published: Amsterdam Elsevier B.V 03-06-2013; Elsevier
• Subjects: Biological and medical sciences; Carbohydrate Epimerases - genetics; Culture Media; DNA Primers; E. coli O157; Escherichia coli; Escherichia coli O157 - genetics; Escherichia coli O157 - physiology; Food industries; Food microbiology; Food Microbiology - methods; Fundamental and applied biological sciences. Psychology; General aspects; L. monocytogenes; Listeria monocytogenes; Listeria monocytogenes - genetics; Listeria monocytogenes - physiology; Methods of analysis, processing and quality control, regulation, standards; Multiplex Polymerase Chain Reaction - standards; Multiplex qPCR; Real-Time Polymerase Chain Reaction - standards; Salmonella; Salmonella - genetics; Salmonella - physiology; Salmonella spp; Sensitivity and Specificity; Transaminases - genetics; Validation; Validation; E. coli O157; L. monocytogenes; Salmonella spp; Multiplex qPCR; Salmonella; Escherichia coli; Listeria monocytogenes; Real time; Polymerase chain reaction; Analysis method; Bacteria; Control method; Molecular biology; Detection; Enterobacteriaceae
• ISSN: 0168-1605; 1879-3460
• DOI: 10.1016/j.ijfoodmicro.2013.03.024

A wide variety of qPCR methods currently exist for Salmonella spp., Escherichia coli O157 and Listeria monocytogenes detection. These methods target several genes and use different detection chemistries, either in simplex or in multiplex formats. However, the majority of these methods have not been carefully validated, and the number of validated methods that use multiplex qPCR is even lower. The aim of the present study was to develop and validate a multiplex qPCR method from previously validated simplex qPCR primers and probes. A modified broth medium was selected and primary and secondary enrichment times were further optimized. Efficiency of the newly combined qPCR system was comprised between 91% and 108%, for simplex and multiplex analyses. A total of 152 food and environmental, natural and spiked samples, were analyzed for the evaluation of the method obtaining values above 91% that were reached for all the quality parameters analyzed. A very low limit of detection (5cfu/25g after enrichment) for simultaneous identification of these 3 pathogens was obtained.
•Complete in-house validation of multiplex qPCR method was done.•Sensitivity, specificity, and accuracy are above 90% with LOD of 5CFU/25g.•Very good concordance was obtained with the kappa index.•Evaluation of the method included 137 samples covering 10 different categories.•Specificity of primers and probe for rfbE gene was tested against 18 Vibrio strains.