Reflects the coat protein variability of apple mosaic virus host preference?

• Published in: Virus genes Vol. 47; no. 1; pp. 119 - 125
• Main Authors: Grimová, L, Winkowska, L, Ryšánek, P, Svoboda, P, Petrzik, K
• Format: Journal Article
• Language: English
• Published: Boston Springer-Verlag 01-08-2013; Springer US; Springer Nature B.V
• Subjects: Amino Acid Sequence; Apple mosaic virus; Biomedical and Life Sciences; Biomedicine; capsid; Capsid Proteins - genetics; genes; Genetic Variation; host preferences; Host Specificity; hosts; Ilarvirus - classification; Ilarvirus - genetics; Ilarvirus - isolation & purification; Ilarvirus - physiology; lichens; Malus - virology; Medical Microbiology; Molecular Sequence Data; Phylogeny; Plant Diseases - virology; Plant Sciences; provenance; Prunus; Rosales; Trebouxia; trees; Virology; viruses; Capsid protein; Hop host; Positive selection tests; Algae host
• ISSN: 0920-8569; 1572-994X
• DOI: 10.1007/s11262-013-0925-z

Apple mosaic virus (ApMV) is a widespread ssRNA virus which infects diverse species of Rosales. The phylogenetic analysis of complete capsid protein gene of the largest set of ApMV isolates discriminated two main clusters of isolates: one cluster correlates with Maloideae hosts and Trebouxia lichen algae hosts; a second with hop, Prunus, and other woody tree hosts. No correlation was found between clusters and geographic origin of virus isolates, and positive selection hypothesis in distinct hosts was not confirmed: in all virus populations, purifying selection had occurred. GGT→AAT substitution resulted in Gly→Asn change inside the zinc-finger motif in the capsid protein was revealed specific for discrimination of the clusters and we hypothesise that could influence the host preference.