Study of the amidase signature group

• Published in: Biochimica et biophysica acta Vol. 1298; no. 2; pp. 285 - 293
• Main Authors: Chebrou, Hervé, Bigey, Frédéric, Arnaud, Alain, Galzy, Pierre
• Format: Journal Article
• Language: English
• Published: Netherlands Elsevier B.V 05-12-1996
• Subjects: Amidase; Amidohydrolases - chemistry; Amidohydrolases - classification; Amino Acid Sequence; Consensus pattern; Conserved Sequence; Databases, Factual; Molecular Sequence Data; Phylogenic tree; Phylogeny; Sequence Homology, Amino Acid; Phylogenic tree; A; B; nth; Amidase; HCA; Consensus pattern; 6ACDH; M; P; R; S; a.a; IAAH
• ISSN: 0167-4838; 0006-3002; 1879-2588
• DOI: 10.1016/S0167-4838(96)00145-8

Computer methods for database search, multiple alignment and cluster analysis indicated significant homology between amino-acid sequences of 21 amidases or amidohydrolases (EC 3.5). All of them were found to be involved in the reduction of organic nitrogen compounds and ammonia production. A conserved motif was found which may be important in amide binding and in catalytic mechanisms. Homology studies between these amidases and some ureases, nitrilases and acyl-transferases or enzymes with unknown functions provided new insight into the evolution of these proteins. Dissemination of these genes seemed to be facilitated by transfer of genetic elements such as transposons and plasmids.