Mitochondrial markers differentiate two distinct phylogenetic groups in indigenous rice landraces of northeast India: an evolutionary insight

• Published in: Journal of genetics Vol. 102; no. 1
• Main Authors: Parida, Madhuchhanda, Gouda, Gayatri, Chidambaranathan, Parameswaran, Umakanta, Ngangkham, Katara, Jawahar Lal, Sai, Cayalvizhi Balasubramania, Samantaray, Sanghamitra, Patra, Bhaskar Chandra, Mohapatra, Trilochan
• Format: Journal Article
• Language: English
• Published: New Delhi Springer India 01-06-2023; Springer
• Subjects: Animal Genetics and Genomics; Biological diversity; Biomedical and Life Sciences; Evolutionary Biology; Genomes; Genomics; India; Life Sciences; Microbial Genetics and Genomics; Oryza - genetics; Phylogeny; Plant Genetics and Genomics; Research Article; India; phylogeny; inheritance; rice diversity; evolution; mitochondrial markers; northeast India
• ISSN: 0973-7731; 0022-1333; 0973-7731
• DOI: 10.1007/s12041-023-01422-0

The inheritance of the mitochondria genome and its diversity is unique for genetic and evolutionary studies relative to nuclear genomes. Northeast India and Himalayan regions are considered as one of the centres of
indica
rice origin. Also, rice diversity in northeast India is very distinct and highly suited for evolutionary studies. Although reports are available on the genetic diversity of indigenous northeast rice landraces, its relationship with the wild relatives is not yet properly explored and understood. In an attempt, mitochondrial markers were used to study the evolutionary relationship between the 68 landraces of northeast India and wild relatives (
O. rufipogon
and
O. nivara
) along with IR64 (
indica
) and Nipponbare (
japonica
) were taken as reference cultivars. Phylogenetically, the findings include two distinct clusters in the indigenous northeast India landraces representing
indica
and
japonica
groups. Further, the wild relatives and ~60% of northeast India landraces were identified to be closely related to the Nipponbare cluster. Besides, landraces of northeast India grouping with the
indica
group (IR64) are characterized by the absence of wild relatives. This indicates that there are two distinct evolutionary paths in the origin of northeast Indian rice landraces based on mitochondrial markers diversity and it is proposed that the inheritance of mitochondria, mitonuclear genome interactions, and bottleneck events could have genetically separated these two phylogenetically unique groups of northeast rice landraces.