Environmental Assessment of Classical Human Astrovirus in Uruguay

• Published in: Food and environmental virology Vol. 7; no. 2; pp. 142 - 148
• Main Authors: Lizasoain, A., Tort, L. F. L., García, M., Gómez, M. M., Cristina, J., Leite, J. P. G., Miagostovich, M. P., Victoria, M., Colina, R.
• Format: Journal Article
• Language: English
• Published: New York Springer US 01-06-2015
• Subjects: Biomedical and Life Sciences; Biomedicine; Chemistry/Food Science; Food Science; Original Paper; Virology; Environment; Astrovirus; Sewage; Uruguay; Epidemiology; Diversity
• ISSN: 1867-0334; 1867-0342
• DOI: 10.1007/s12560-015-9186-4

The aim of this study was to determine the molecular epidemiology of classical human astrovirus (HAstV) strains in sewage samples from four Uruguayan cities: Bella Unión, Salto, Paysandú, and Fray Bentos, located in the Northwestern region of the country. Overall, 96 sewage samples were collected biweekly between March 2011 and February 2012 and were subject to ultracentrifugation methodology in order to concentrate the viruses. RT-PCR directed to the ORF2 genome region was performed followed by sequencing and phylogenetic analysis. Forty-three (45 %) out of 96 analyzed samples were positive for HAstV (
Mamastrovirus
1) and 31 of them were successfully sequenced being 21 (49 %) of them classified as HAstV-1 genotype (1a lineage) and 10 (23 %) as HAstV-2 genotype (eight strains belonging to the 2d lineage and two strains to the 2c lineage). The 1a lineage circulated throughout the year, while the 2d lineage only in the coldest months (June to October). Strikingly, the 2c lineage was detected only in Salto city during March 2011. In this city it was observed the highest frequency of HAstV and the greatest genetic diversity, probably due to its role as high touristic spot with an important influx of visitants from others regions of Uruguay and also from other countries. This study constitutes the first report in Uruguay that describes the phylogenetic diversity and genotype distribution of HAstV strains circulating in the Northwestern region evidencing a high frequency and also the presence of several different lineages.