Novel genes are enriched in normalized cDNA libraries from drought-stressed seedlings of rice (Oryza sativa L. subsp. indica cv. Nagina 22)

• Published in: Genome Vol. 45; no. 1; p. 204
• Main Authors: Reddy, Arjula R, Ramakrishna, W, Sekhar, A Chandra, Ithal, Nagabhushana, Babu, P Ravindra, Bonaldo, M F, Soares, M B, Bennetzen, Jeffrey L
• Format: Journal Article
• Language: English
• Published: Canada 01-02-2002
• Subjects: DNA, Complementary; Expressed Sequence Tags; Gene Library; Oryza - genetics; Seeds; Structure-Activity Relationship
• ISSN: 0831-2796
• DOI: 10.1139/g01-114

We have utilized an efficient method to enrich cDNA libraries for novel genes and genes responsive to drought stress in rice (Oryza sativa L. subsp. indica). We separately constructed standard and normalized cDNA libraries from leaf tissue of rice seedlings grown under controlled drought stress. Sequencing from the 3' end was performed on 1000 clones from the normalized leaf cDNA library and 200 clones from the standard leaf cDNA library. For the first 200 clones, the clone redundancy in the non-normalized library was about 10%, compared with 3.5% in the normalized cDNA library. Comparison of these cDNAs with the sequences in public databases revealed that 28.2% of the expressed sequence tags (ESTs) from the normalized library were novel. Clones from the standard and normalized leaf libraries and a root library uncovered numerous cDNAs that are highly homologous to known drought-responsive genes including those that encode metallothioneins, late embroyonic abundant (LEA) proteins, heat-shock proteins, cytochrome P450 enzymes, catalases, peroxidases, kinases, phosphatases, and transcription factors.