ISAC Probe Tag Dictionary: Standardized Nomenclature for Detection and Visualization Labels Used in Cytometry and Microscopy Imaging

• Published in: Cytometry. Part A Vol. 99; no. 1; pp. 103 - 106
• Main Authors: Blenman, Kim R. M., Spidlen, Josef, Parks, David R., Moore, Wayne, Treister, Adam, Leif, Robert, Bray, Chris, Goldberg, Michael, Brinkman, Ryan
• Format: Journal Article
• Language: English
• Published: Hoboken, USA John Wiley & Sons, Inc 01-01-2021; Wiley Subscription Services, Inc
• Subjects: bioinformatics; Computer programs; Data analysis; Data mining; Data processing; data standards; Databases, Factual; Dictionaries; dictionary; Documents; FCS; Flow Cytometry; Humans; Imaging; Indicators and Reagents; labels; Microscopy; microscopy imaging; nomenclature; Platforms; probe tag; Probes; Reagents; Software; Tags; nomenclature; data standards; dictionary; microscopy imaging; FCS; bioinformatics; flow cytometry; probe tag; labels
• ISSN: 1552-4922; 1552-4930
• DOI: 10.1002/cyto.a.24224

Since the advent of microscopy imaging and flow cytometry, there has been an explosion in the number of probes, consisting of a component binding to an analyte and a detectable tag, to mark areas of interest in or on cells and tissue. Probe tags have been created to detect and/or visualize probes. Over time, these probe tags have increased in number. The expansion has resulted in arbitrarily created synonyms of probe tags used in publications and software. The synonyms are problematic for readability of publications, accuracy of text/data mining, and bridging data from multiple platforms, protocols, and databases for Big Data analysis. Development and implementation of a universal language for probe tags will ensure equivalent quality and level of data being reported or extracted for clinical/scientific evaluation as well as help connect data from many platforms. The International Society for Advancement of Cytometry Data Standards Task Force composed of academic scientists and industry hardware/software/reagent manufactures have developed recommendations for a standardized nomenclature for probe tags used in cytometry and microscopy imaging. These recommendations are shared in this technical note in the form of a Probe Tag Dictionary. © 2020 International Society for Advancement of Cytometry