The Spider Anatomy Ontology (SPD)—A Versatile Tool to Link Anatomy with Cross-Disciplinary Data

• Published in: Diversity (Basel) Vol. 11; no. 10; p. 202
• Main Authors: Ramírez, Martín J., Michalik, Peter
• Format: Journal Article
• Language: English
• Published: Basel MDPI AG 01-10-2019
• Subjects: Anatomy; araneae; Arthropods; Genes; Interdisciplinary aspects; Jargon; Morphology; Names; Ontology; Phylogenetics; Phylogeny; Retina; semantic network; Spiders; Systematics; Taxonomy; Terminology
• ISSN: 1424-2818; 1424-2818
• DOI: 10.3390/d11100202

Spiders are a diverse group with a high eco-morphological diversity, which complicates anatomical descriptions especially with regard to its terminology. New terms are constantly proposed, and definitions and limits of anatomical concepts are regularly updated. Therefore, it is often challenging to find the correct terms, even for trained scientists, especially when the terminology has obstacles such as synonyms, disputed definitions, ambiguities, or homonyms. Here, we present the Spider Anatomy Ontology (SPD), which we developed combining the functionality of a glossary (a controlled defined vocabulary) with a network of formalized relations between terms that can be used to compute inferences. The SPD follows the guidelines of the Open Biomedical Ontologies and is available through the NCBO BioPortal (ver. 1.1). It constitutes of 757 valid terms and definitions, is rooted with the Common Anatomy Reference Ontology (CARO), and has cross references to other ontologies, especially of arthropods. The SPD offers a wealth of anatomical knowledge that can be used as a resource for any scientific study as, for example, to link images to phylogenetic datasets, compute structural complexity over phylogenies, and produce ancestral ontologies. By using a common reference in a standardized way, the SPD will help bridge diverse disciplines, such as genomics, taxonomy, systematics, evolution, ecology, and behavior.