RVDB-prot, a reference viral protein database and its HMM profiles [version 1; peer review: 2 approved with reservations]

RVDB-prot, a reference viral protein database and its HMM profiles [version 1; peer review: 2 approved with reservations]

We present RVDB-prot, a database corresponding to the protein equivalent of the nucleic acid reference virus database RVDB. Protein databases can be helpful to perform more sensitive protein sequence comparisons. Similarly to its homologous public repository, RVDB-prot aims to provide reliable and a...

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Bibliographic Details
Published in:F1000 research Vol. 8; p. 530
Main Authors: Bigot, Thomas, Temmam, Sarah, Pérot, Philippe, Eloit, Marc
Format: Journal Article
Language:English
Published: England 2019
Subjects:
genomes
database
proteins
hmm
annotations
virus
clusters
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Description
Summary:We present RVDB-prot, a database corresponding to the protein equivalent of the nucleic acid reference virus database RVDB. Protein databases can be helpful to perform more sensitive protein sequence comparisons. Similarly to its homologous public repository, RVDB-prot aims to provide reliable and accurately annotated unique entries, while including also an Hidden Markov Model (HMM) protein profiles database for distant protein searching.
ISSN:2046-1402
2046-1402
DOI:10.12688/f1000research.18776.1