Unveiling therapeutic frontiers: DON/DRP-104 as innovative Plasma kallikrein inhibitors against carcinoma-associated hereditary angioedema shocks - a comprehensive molecular dynamics exploration

• Published in: Cell biochemistry and biophysics Vol. 82; no. 2; pp. 1159 - 1177
• Main Authors: Oduro-Kwateng, Ernest, Soliman, Mahmoud E. S.
• Format: Journal Article
• Language: English
• Published: New York Springer US 01-06-2024; Springer Nature B.V
• Subjects: Angioedema; Angioedemas, Hereditary - drug therapy; Anticancer properties; Biochemistry; Biological and Medical Physics; Biomedical and Life Sciences; Biophysics; Biotechnology; Blood coagulation; Blood plasma; Blood pressure; Cancer; Carcinoma; Catalytic converters; Cell Biology; Chemical bonds; Clinical trials; Comparative analysis; Drugs; Glutamine; Humans; Hydrogen Bonding; Hydrogen bonds; Inhibitors; Kallikreins; Life Sciences; Medical innovations; Molecular Docking Simulation; Molecular dynamics; Molecular Dynamics Simulation; Neoplasms - drug therapy; Norleucine; Original Paper; Pharmacology; Pharmacology/Toxicology; Plasma kallikrein; Plasma Kallikrein - antagonists & inhibitors; Plasma Kallikrein - metabolism; Prodrugs - chemistry; Prodrugs - pharmacology; Prodrugs - therapeutic use; Protein folding; Protein structure; Residues; Rigidity; Serine proteinase; Structural stability; Vasodilation; DRP-104; molecular dynamics; Hereditary Angioedema; Plasma kallikrein; Cancer
• ISSN: 1085-9195; 1559-0283; 1559-0283
• DOI: 10.1007/s12013-024-01266-0

Human plasma kallikrein (PKa) is a member of the serine protease family and serves as a key mediator of the kallikrein-kinin system (KKS), which is known for its regulatory roles in inflammation, vasodilation, blood pressure, and coagulation. Genetic dysregulation of KKS leads to Hereditary Angioedema (HAE), which is characterized by spontaneous, painful swelling in various body regions. Importantly, HAE frequently coexists with various cancers. Despite substantial efforts towards the development of PKa inhibitors for HAE, there remains a need for bifunctional agents addressing both anti-cancer and anti-HAE aspects, especially against carcinoma-associated comorbid HAE conditions. Consequently, we investigated the therapeutic potential of the anti-glutamine prodrug, isopropyl(S)-2-((S)-2-acetamido-3-(1H-indol-3-yl)-propanamido)-6-diazo-5-oxo-hexanoate (DRP-104), and its active form, 6-Diazo-5-oxo-l-norleucine (DON), recognized for their anti-cancer properties, as novel PKa inhibitors. Utilizing structure-based in silico methods, we conducted a comparative analysis with berotralstat, a clinically approved HAE prophylactic, and sebetralstat, an investigational HAE therapeutic agent, in Phase 3 clinical trials. Inhibiting PKa with DON resulted in relatively heightened structural stability, rigidity, restricted protein folding, and solvent-accessible loop exposure, contributing to increased intra-atomic hydrogen bond formation. Conversely, PKa inhibition with DRP-104 induced restricted residue flexibility and significantly disrupted the critical SER195-HIS57 arrangement in the catalytic triad. Both DON and DRP-104, along with the reference drugs, induced strong cooperative intra-residue motion and bidirectional displacement in the PKa architecture. The results revealed favorable binding kinetics of DON/DRP-104, showing thermodynamic profiles that were either superior or comparable to those of the reference drugs. These findings support their consideration for clinical investigations into the management of carcinoma-associated HAE.