Atomic force microscopy fishing of GP120 on immobilized aptamers and its mass spectrometry identification
A method of atomic force microscopy-based fishing (AFM fishing) has been developed for protein detection in the analyte solution using a chip with an immobilized aptamer. This method is based on the biospecific fishing of a target protein from a bulk solution onto the small AFM chip area with the im...
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| Published in: | Biochemistry (Moscow). Supplement. Series B, Biomedical chemistry Vol. 8; no. 2; pp. 115 - 124 |
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| Main Authors: | , , , , , , , , , , |
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| Language: | English |
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| Abstract | A method of atomic force microscopy-based fishing (AFM fishing) has been developed for protein detection in the analyte solution using a chip with an immobilized aptamer. This method is based on the biospecific fishing of a target protein from a bulk solution onto the small AFM chip area with the immobilized aptamer to this protein used as the molecular probe. Such aptamer-based approach allows to increase an AFM image contrast compared to the antibody-based approach. Mass spectrometry analysis used after the biospecific fishing to identify the target protein on the AFM chip has proved complex formation. Use of the AFM chip with the immobilized aptamer avoids interference of the antibody and target protein peaks in a mass spectrum. |
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| AbstractList | A method of atomic force microscopy-based fishing (AFM fishing) has been developed for protein detection in the analyte solution using a chip with an immobilized aptamer. This method is based on the biospecific fishing of a target protein from a bulk solution onto the small AFM chip area with the immobilized aptamer to this protein used as the molecular probe. Such aptamer-based approach allows to increase an AFM image contrast compared to the antibody-based approach. Mass spectrometry analysis used after the biospecific fishing to identify the target protein on the AFM chip has proved complex formation. Use of the AFM chip with the immobilized aptamer avoids interference of the antibody and target protein peaks in a mass spectrum.[PUBLICATION ABSTRACT] A method of atomic force microscopy-based fishing (AFM fishing) has been developed for protein detection in the analyte solution using a chip with an immobilized aptamer. This method is based on the biospecific fishing of a target protein from a bulk solution onto the small AFM chip area with the immobilized aptamer to this protein used as the molecular probe. Such aptamer-based approach allows to increase an AFM image contrast compared to the antibody-based approach. Mass spectrometry analysis used after the biospecific fishing to identify the target protein on the AFM chip has proved complex formation. Use of the AFM chip with the immobilized aptamer avoids interference of the antibody and target protein peaks in a mass spectrum. |
| Author | Bukharina, N. S. Andreeva, E. Yu Pleshakova, T. O. Ivanov, Yu. D. Radko, S. P. Ziborov, V. S. Archakov, A. I. Kaysheva, A. L. Izotov, A. A. Frantsuzov, P. A. Pavlova, T. I. |
| Author_xml | – sequence: 1 givenname: N. S. surname: Bukharina fullname: Bukharina, N. S. email: natalie_buharina@list.ru organization: Orekhovich Institute of Biomedical Chemistry of Russian Academy of Medical Sciences – sequence: 2 givenname: Yu. D. surname: Ivanov fullname: Ivanov, Yu. D. organization: Orekhovich Institute of Biomedical Chemistry of Russian Academy of Medical Sciences – sequence: 3 givenname: T. O. surname: Pleshakova fullname: Pleshakova, T. O. organization: Orekhovich Institute of Biomedical Chemistry of Russian Academy of Medical Sciences – sequence: 4 givenname: P. A. surname: Frantsuzov fullname: Frantsuzov, P. A. organization: Orekhovich Institute of Biomedical Chemistry of Russian Academy of Medical Sciences – sequence: 5 givenname: E. Yu surname: Andreeva fullname: Andreeva, E. Yu organization: Orekhovich Institute of Biomedical Chemistry of Russian Academy of Medical Sciences – sequence: 6 givenname: A. L. surname: Kaysheva fullname: Kaysheva, A. L. organization: Orekhovich Institute of Biomedical Chemistry of Russian Academy of Medical Sciences – sequence: 7 givenname: A. A. surname: Izotov fullname: Izotov, A. A. organization: Orekhovich Institute of Biomedical Chemistry of Russian Academy of Medical Sciences – sequence: 8 givenname: T. I. surname: Pavlova fullname: Pavlova, T. I. organization: Orekhovich Institute of Biomedical Chemistry of Russian Academy of Medical Sciences – sequence: 9 givenname: V. S. surname: Ziborov fullname: Ziborov, V. S. organization: Orekhovich Institute of Biomedical Chemistry of Russian Academy of Medical Sciences – sequence: 10 givenname: S. P. surname: Radko fullname: Radko, S. P. organization: Orekhovich Institute of Biomedical Chemistry of Russian Academy of Medical Sciences – sequence: 11 givenname: A. I. surname: Archakov fullname: Archakov, A. I. organization: Orekhovich Institute of Biomedical Chemistry of Russian Academy of Medical Sciences |
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| Keywords | mass spectrometry atomic force microscopy aptamer gp120 HIV-1 fishing |
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| Title | Atomic force microscopy fishing of GP120 on immobilized aptamers and its mass spectrometry identification |
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