Evidence of isochorismate channeling between the Escherichia coli enterobactin biosynthetic enzymes EntC and EntB

• Published in: Protein science Vol. 33; no. 8; pp. e5122 - n/a
• Main Authors: Bin, Xue, Pawelek, Peter D.
• Format: Journal Article
• Language: English
• Published: Hoboken, USA John Wiley & Sons, Inc 01-08-2024; Wiley Subscription Services, Inc
• Subjects: Assaying; automated docking; Channeling; Chorismic Acid - chemistry; Chorismic Acid - metabolism; Complex formation; E coli; Enterobactin; Enterobactin - biosynthesis; Enterobactin - chemistry; Enterobactin - metabolism; Enzymes; Escherichia coli; Escherichia coli - enzymology; Escherichia coli - genetics; Escherichia coli - metabolism; Escherichia coli Proteins - chemistry; Escherichia coli Proteins - genetics; Escherichia coli Proteins - metabolism; Hydrolases; Isochorismatase; protein–protein interaction; siderophore; site‐directed mutagenesis; substrate channeling; Substrates; enterobactin; protein–protein interaction; substrate channeling; site‐directed mutagenesis; automated docking; siderophore
• ISSN: 0961-8368; 1469-896X; 1469-896X
• DOI: 10.1002/pro.5122

Enterobactin is a high‐affinity iron chelator produced and secreted by Escherichia coli and Salmonella typhimurium to scavenge scarce extracellular Fe3+ as a micronutrient. EntC and EntB are the first two enzymes in the enterobactin biosynthetic pathway. Isochorismate, produced by EntC, is a substrate for EntB isochorismatase. By using a competing isochorismate‐consuming enzyme (the E. coli SEPHCHC synthase MenD), we found in a coupled assay that residual EntB isochorismatase activity decreased as a function of increasing MenD concentration. In the presence of excess MenD, EntB isochorismatase activity was observed to decrease by 84%, indicative of partial EntC‐EntB channeling (16%) of isochorismate. Furthermore, addition of glycerol to the assay resulted in an increase of residual EntB isochorismatase activity to approximately 25% while in the presence of excess MenD. These experimental outcomes supported the existence of a substrate channeling surface identified in a previously reported protein‐docking model of the EntC‐EntB complex. Two positively charged EntB residues (K21 and R196) that were predicted to electrostatically guide negatively charged isochorismate between the EntC and EntB active sites were mutagenized to determine their effects on substrate channeling. The EntB variants K21D and R196D exhibited a near complete loss of isochorismatase activity, likely due to electrostatic repulsion of the negatively charged isochorismate substrate. Variants K21A, R196A, and K21A/R196A retained partial EntB isochorismatase activity in the absence of EntC; in the presence of EntC, isochorismatase activity in all variants increased to near wild‐type levels. The MenD competition assay of the variants revealed that while K21A channeled isochorismate as efficiently as wild‐type EntB (~ 15%), the variants K21A/R196A and R196A exhibited an approximately 5‐fold loss in observed channeling efficiency (~3%). Taken together, these results demonstrate that partial substrate channeling occurs between EntC and EntB via a leaky electrostatic tunnel formed upon dynamic EntC‐EntB complex formation and that EntB R196 plays an essential role in isochorismate channeling.