SMN1 c.5C>G (p.Ala2Gly) missense variant, a challenging molecular SMA diagnosis associated with mild disease, preserves SMN nuclear gems in patient-specific fibroblasts

• Published in: Frontiers in genetics Vol. 15; p. 1406819
• Main Authors: Cook, Sara L, Stout, Christian, Kirkeby, Lindsey, Vidal-Folch, Noemi, Oglesbee, Devin, Hasadsri, Linda, Selcen, Duygu, Milone, Margherita, Anderson, Daniel, Staff, Nathan P
• Format: Journal Article
• Language: English
• Published: Switzerland Frontiers Media S.A 30-07-2024
• Subjects: c.5C>G; exon 1; Genetics; nuclear gems; p.Ala2Gly; SMN1; spinal muscular atrophy; nuclear gems; c.5C>G; diagnostic testing; spinal muscular atrophy; SMN1; exon 1; p.Ala2Gly
• ISSN: 1664-8021; 1664-8021
• DOI: 10.3389/fgene.2024.1406819

Spinal muscular atrophy (SMA) is caused by homozygous loss of the
gene with
gene copy number correlating with disease severity. Rarely SMA is caused by a deletion on one allele and a pathogenic variant on the other. The pathogenic missense variant c.5C>G (p.Ala2Gly) correlates with a mild disease phenotype that does not correlate with
copy number. In a mouse model the c.5C>G transgene produces SMN that is thought to form partially functional SMN complexes, but levels in humans have not yet been investigated.
We identified two patients with mild SMA caused by a heterozygous deletion of
and the heterozygous variant, c.5C>G. Molecular findings were confirmed with deletion/duplication analysis and Sanger sequencing. Skin fibroblasts were collected and cultured, and SMN expression was analyzed using immunofluorescence.
Two patients with slowly progressing mild weakness were confirmed to have heterozygous pathogenic missense variant c.5C>G and a heterozygous deletion of
. Their clinical presentation revealed much milder disease progression than patients with matched
copy number. Analysis of the patients' fibroblasts revealed much higher numbers of SMN nuclear complexes than a patient with a homozygous
deletion and matched
copy number.
These case reports reinforce that the rare c.5C>G variant causes mild disease. Furthermore, the analysis of SMA nuclear gems in patient samples supports the theory that the p.Ala2Gly SMN can form partially functional SMN complexes that may carry out essential cellular functions and result in mild disease.