Prevalence of KRAS amplification in patients with metastatic cancer: Real-world next-generation sequencing analysis

• Published in: Pathology, research and practice Vol. 261; p. 155473
• Main Authors: Choi, Dae-Ho, Jang, Hye-Lim, Lim, Sung Hee, Kim, Seung Tae, Hong, Jung Yong, Park, Se Hoon, Park, Joon Oh, Kim, Deok geun, Kim, Kyoung-Mee, Lee, Jeeyun
• Format: Journal Article
• Language: English
• Published: Germany Elsevier GmbH 01-09-2024
• Subjects: Adult; Aged; and Tumor burden; Biomarkers, Tumor - genetics; Chemotherapy; Female; Gene Amplification; High-Throughput Nucleotide Sequencing - methods; Humans; KRAS; Male; Metastasis; Middle Aged; Mutation; Neoplasm Metastasis - genetics; Neoplasms; Neoplasms - genetics; Neoplasms - pathology; Next-Generation Sequencing; Prevalence; Proto-Oncogene Mas; Proto-Oncogene Proteins p21(ras) - genetics; GTP; MSI; CCC; CPS; TMB; CNV; Metastasis; Neoplasms; SHP2; GDP; Chemotherapy; TSO 500; MMR; PI3K; FFPE; RAF; and Tumor burden; PD-L1; KRAS; Next-Generation Sequencing
• ISSN: 0344-0338; 1618-0631; 1618-0631
• DOI: 10.1016/j.prp.2024.155473

The Kirsten rat sarcoma virus (KRAS) is a prominent proto-oncogene. Several treatments for KRAS mutations have been developed. However, KRAS amplification, a KRAS alteration, is poorly understood, and there is currently no appropriate treatment other than conventional chemotherapy. This study aimed to elucidate the role of KRAS amplification in different types of cancers.
From October 2019 to June 2023, we performed next-generation sequencing using Trusight Oncology 500 on 3895 patients with 37 different cancer types at the Samsung Medical Center. We analyzed the distribution of KRAS amplification according to cancer type and its correlation with tumor mutation burden (TMB). Concomitant KRAS mutations were also identified.
Of the total 3895 patients, 99 (2.5 %) had KRAS amplification. The highest frequency of KRAS amplification was detected in 2 % (27/1350) of patients with colorectal cancer, followed by 3.48 % (32/920) of patients with gastric cancer and 3.88 % (9/232) patients with of pancreatic cancer. MSI-High was not detected in patients with KRAS amplification. There was no correlation between KRAS copy number variation and TMB status. Among patients with KRAS amplification, 27.3 % (27/99) had a concomitant KRAS mutation. More than 50 % of patients had G12D or G12V mutations. In gastric cancer, patients with both KRAS amplification and mutation were extremely rare at 3.1 % (1/32); however, in colorectal cancer, more than half of the patients had KRAS amplification and mutation (51.9 %, 14/27). KRAS amplification and mutations are associated with mutations in tumor suppressor genes TP53, BRCA2, ARID1B, and PTCH1.
Of the 3895 patients with metastatic solid tumors, 99 (2.5 %) had KRAS amplification, and next-generation sequencing analysis provided a deeper understanding of KRAS amplification.