Ultrasensitive Electrochemical Detection of MicroRNA Based on an Arched Probe Mediated Isothermal Exponential Amplification

• Published in: Analytical chemistry (Washington) Vol. 86; no. 16; pp. 8200 - 8205
• Main Authors: Yu, Yanyan, Chen, Zuanguang, Shi, Lijuan, Yang, Fan, Pan, Jianbin, Zhang, Beibei, Sun, Duanping
• Format: Journal Article
• Language: English
• Published: United States American Chemical Society 19-08-2014
• Subjects: Amplification; Biosensors; Biotechnology; Cancer; Cell Line, Tumor; Cells; Cleavage; DNA Probes - chemistry; Electrocatalysis; Electrochemical Techniques - methods; Electrodes; G-Quadruplexes; Hemin - chemistry; Humans; Limit of Detection; MicroRNAs - analysis; Nucleic Acid Amplification Techniques - methods; Ribonucleic acid; Ribonucleic acids; RNA; Strands
• ISSN: 0003-2700; 1520-6882
• DOI: 10.1021/ac501505a

In this work, a simple and label-free electrochemical biosensor is developed for microRNA (miRNA) detection on the basis of an arched probe mediated isothermal exponential amplification reaction (EXPAR). The arched probe assembled on the electrode surface consists of two strands that are partially complementary to each other at both ends. The target can hybridize with the complementary sequence of the arched structure, leading to the cleavage of the probe. The strand fixed on the surface of the electrode self-assembles, in the presence of hemin, to G-quadruplex unit, yielding electrochemical signals. The other strand liberated into the solution triggers the EXPAR to recycle and regenerate targets. This method exhibits ultrahigh sensitivity toward miRNA with detection limits of 5.36 fM and a detection range of 3 orders of magnitude. The biosensor is capable of discriminating a single-nucleotide difference between concomitant miRNA and performs well in analyzing crude extractions from cancer cell lines.