Metadynamics as a Tool for Exploring Free Energy Landscapes of Chemical Reactions

The metadynamics or hills method is a relatively new molecular dynamics technique aimed to enhance the sampling of separated regions in phase space and map out the underlying free energy landscape as a function of a small number of order parameters or collective variables. The high efficiency allows...

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Bibliographic Details
Published in:Accounts of chemical research Vol. 39; no. 2; pp. 73 - 81
Main Authors: Ensing, Bernd, De Vivo, Marco, Liu, Zhiwei, Moore, Preston, Klein, Michael L
Format: Journal Article
Language:English
Published: United States American Chemical Society 01-02-2006
Online Access:Get full text
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Summary:The metadynamics or hills method is a relatively new molecular dynamics technique aimed to enhance the sampling of separated regions in phase space and map out the underlying free energy landscape as a function of a small number of order parameters or collective variables. The high efficiency allows for the application of metadynamics in combination with first principles dynamics methods, in particular with Car−Parrinello molecular dynamics, to study processes in which changes in the electronic structure play a dominant role, such as chemical reactions. The option to choose several independent collective variables is important to tackle complex and concerted transformations that lack an obvious a priori choice for a single reaction coordinate. In this Account, we discuss the role of metadynamics in the search of transition states, local minima, reaction paths, free energy profiles, and reaction coordinates among a growing list of alternative methods.
Bibliography:istex:9D79DC0EA11D8D4B9C00C4C64D489B3B26C97E64
ark:/67375/TPS-XTS4ZH20-Q
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ISSN:0001-4842
1520-4898
DOI:10.1021/ar040198i