Ensemble Docking Approach to Mitigate Pregnane X Receptor-Mediated CYP3A4 Induction Risk

• Published in: Journal of chemical information and modeling Vol. 63; no. 1; pp. 173 - 186
• Main Authors: Chen, Qi, Zhou, Xin, Rehmel, Jessica, Steele, James P., Svensson, Kjell A., Beck, James P., Hembre, Erik J., Hao, Junliang
• Format: Journal Article
• Language: English
• Published: United States American Chemical Society 09-01-2023
• Subjects: Binding; Computational Chemistry; Cytochrome P-450 CYP3A - metabolism; Docking; Dopamine; Enzyme Induction; Homology; Modulators; Pregnane X Receptor - metabolism; Receptors; Receptors, Steroid - chemistry; Receptors, Steroid - genetics; Receptors, Steroid - metabolism; Scaffolds
• ISSN: 1549-9596; 1549-960X
• DOI: 10.1021/acs.jcim.2c01175

Three structurally closely related dopamine D1 receptor positive allosteric modulators (D1 PAMs) based on a tetrahydroisoquinoline (THIQ) scaffold were profiled for their CYP3A4 induction potentials. It was found that the length of the linker at the C5 position greatly affected the potentials of these D1 PAMs as CYP3A4 inducers, and the level of induction correlated well with the activation of the pregnane X receptor (PXR). Based on the published PXR X-ray crystal structures, we built a binding model specifically for these THIQ-scaffold-based D1 PAMs in the PXR ligand-binding pocket via an ensemble docking approach and found the model could explain the observed CYP induction disparity. Combined with our previously reported D1 receptor homology model, which identified the C5 position as pointing toward the solvent-exposed space, our PXR-binding model coincidentally suggested that structural modifications at the C5 position could productively modulate the CYP induction potential while maintaining the D1 PAM potency of these THIQ-based PAMs.