Combining RNA sequencing technologies to annotate the bovine genome

Combining RNA sequencing technologies to annotate the bovine genome

Bovine genome annotation with RNaseq has been challenging due to the complexity of alternative splicing, potential for read mapping errors, high repeat content of the genome and expressed sequences, and the need to assemble full-length transcripts from short reads. Here, an abstract of an article by...

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Bibliographic Details
Published in:Journal of animal science Vol. 94; pp. 34 - 35
Main Authors: Hagen, D E, Unni, D R, Elsik, C G
Format: Journal Article
Language:English
Published: Champaign Oxford University Press 01-09-2016
Subjects:
Alternative splicing
Annotations
Cattle
Gene mapping
Gene sequencing
Genomes
Ribonucleic acid
RNA
Splicing
Online Access:Get full text
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Summary:Bovine genome annotation with RNaseq has been challenging due to the complexity of alternative splicing, potential for read mapping errors, high repeat content of the genome and expressed sequences, and the need to assemble full-length transcripts from short reads. Here, an abstract of an article by Hagen et al re-annotating the bovine genome using multiple RNA sequencing technologies is presented.
ISSN:0021-8812
1525-3163