1H, 13C, and 15N NMR backbone assignments and secondary structure of human interferon-γ

• Published in: Biochemistry (Easton) Vol. 31; no. 35; pp. 8180 - 8190
• Main Authors: GRZESIEK, S, DÖBELI, H, GENTZ, R, GAROTTA, G, LABHARDT, A. M, BAX, A
• Format: Journal Article
• Language: English
• Published: Washington, DC American Chemical Society 08-09-1992
• Subjects: Amino Acid Sequence; Analysis of the immune response. Humoral and cellular immunity; Biological and medical sciences; Carbon Isotopes; Fundamental and applied biological sciences. Psychology; Fundamental immunology; Humans; Hydrogen; Immunobiology; Interferon-gamma - chemistry; Lymphokines, interleukins ( function, expression); Magnetic Resonance Spectroscopy - methods; Models, Structural; Molecular Sequence Data; Nitrogen Isotopes; Protein Conformation; Recombinant Proteins; Regulatory factors and their cellular receptors; Human; NMR spectrometry; N dimensional spectrometry; Secondary structure; Cytokine; Gamma interferon
• ISSN: 0006-2960; 1520-4995

1H, 13C, and 15N NMR assignments of the protein backbone of human interferon-gamma, a homodimer of 31.4 kDa, have been made using the recently introduced three-dimensional (3D) triple-resonance NMR techniques. It is shown that, despite the approximately 40-50-Hz 13C alpha and 1H alpha line widths of this high molecular weight dimer and the extensive overlap in the 1H alpha and 13C alpha spectral regions, unique sequential assignments can be made on the basis of combined use of the 3D HNCO, HNCA, HN(CO)CA, and HCACO constant-time experiments, the 15N-separated 3D NOESY-HMQC, and the 3D HOHAHA-HMQC experiments. Analysis of the 15N-separated 3D NOESY-HMQC and 13C/15N-separated four-dimensional (4D) NOESY-HMQC spectra together with the secondary C alpha and C beta chemical shifts yielded extensive secondary structure information. The NMR-derived secondary structure essentially confirms results of a recently published low-resolution crystal structure [Ealick et al. (1991) Science 252, 698-702], i.e., six helices in the monomer which are mostly alpha-helical in nature, no beta-sheets, a long flexible loop between helices A and B, and a very hydrophobic helix C. The functionally important carboxy terminus, which was not observed in the X-ray study, does not adopt a rigid conformation in solution. A high degree of internal mobility, starting at Pro-123, gives rise to significantly narrower resonance line widths for these carboxy-terminal residues compared to the rest of the protein.