Calculating metalation in cells reveals CobW acquires Co II for vitamin B 12 biosynthesis while related proteins prefer Zn II

• Published in: Nature communications Vol. 12; no. 1; p. 1195
• Main Authors: Young, Tessa R, Martini, Maria Alessandra, Foster, Andrew W, Glasfeld, Arthur, Osman, Deenah, Morton, Richard J, Deery, Evelyne, Warren, Martin J, Robinson, Nigel J
• Format: Journal Article
• Language: English
• Published: England 19-02-2021
• Subjects: Bacterial Proteins - metabolism; Cobalt - metabolism; Escherichia coli; GTP Phosphohydrolases; Metals - metabolism; Salmonella; Vitamin B 12 - biosynthesis; Zinc - metabolism
• ISSN: 2041-1723
• DOI: 10.1038/s41467-021-21479-8

Protein metal-occupancy (metalation) in vivo has been elusive. To address this challenge, the available free energies of metals have recently been determined from the responses of metal sensors. Here, we use these free energy values to develop a metalation-calculator which accounts for inter-metal competition and changing metal-availabilities inside cells. We use the calculator to understand the function and mechanism of GTPase CobW, a predicted Co
-chaperone for vitamin B
. Upon binding nucleotide (GTP) and Mg
, CobW assembles a high-affinity site that can obtain Co
or Zn
from the intracellular milieu. In idealised cells with sensors at the mid-points of their responses, competition within the cytosol enables Co
to outcompete Zn
for binding CobW. Thus, Co
is the cognate metal. However, after growth in different [Co
], Co
-occupancy ranges from 10 to 97% which matches CobW-dependent B
synthesis. The calculator also reveals that related GTPases with comparable Zn
affinities to CobW, preferentially acquire Zn
due to their relatively weaker Co
affinities. The calculator is made available here for use with other proteins.