GPU-accelerated protein sequence alignment

Smith-Waterman (S-W) algorithm is an optimal sequence alignment method and is widely used for genetic databases. This paper presents a Graphics Processing Units (GPUs) accelerated S-W implementation for protein sequence alignment. The paper proposes a new sequence database organization and several o...

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Bibliographic Details

Published in:	2011 Annual International Conference of the IEEE Engineering in Medicine and Biology Society Vol. 2011; pp. 2442 - 2446
Main Authors:	Hasan, L., Kentie, M., Al-Ars, Z.
Format:	Conference Proceeding Journal Article
Language:	English
Published:	United States IEEE 01-01-2011
Subjects:	Acceleration Algorithms Bandwidth Bioinformatics Database Organization Databases, Protein GPUs Graphics processing unit Instruction sets Matrices Protein Sequence Alignment Proteins Proteins - chemistry Sequence Homology, Amino Acid Smith-Waterman Algorithm
Online Access:	Get full text
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