Identification of differential selection traces in two Polish cattle breeds
Genetic improvement of animals based on artificial selection is leading to changes in the frequency of genes related to desirable production traits. The changes are reflected by the neutral, intergenic single nucleotide polymorphims (SNPs) being in long‐range linkage disequilibrium with functional p...
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| Published in: | Animal science journal Vol. 86; no. 1; pp. 17 - 24 |
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| Format: | Journal Article |
| Language: | English |
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Japanese Society of Zootechnical Science, Jan. 1999-<Apr. 2003>
01-01-2015
Blackwell Publishing Ltd |
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| Abstract | Genetic improvement of animals based on artificial selection is leading to changes in the frequency of genes related to desirable production traits. The changes are reflected by the neutral, intergenic single nucleotide polymorphims (SNPs) being in long‐range linkage disequilibrium with functional polymorphisms. Genome‐wide SNP analysis tools designed for cattle, allow for scanning divergences in allelic frequencies between distinct breeds and thus for identification of genomic regions which were divergently selected in breeds' histories. In this study, by using Bovine SNP50 assay, we attempted to identify genomic regions showing the highest differences in allele frequencies between two distinct cattle breeds – preserved, unselected Polish Red breed and highly selected Holstein cattle. Our study revealed 19 genomic regions encompassing 55 protein‐coding genes and numerous quantitative trait loci which potentially may underlie some of the phenotypic traits distinguishing the breeds. |
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| AbstractList | Genetic improvement of animals based on artificial selection is leading to changes in the frequency of genes related to desirable production traits. The changes are reflected by the neutral, intergenic single nucleotide polymorphims (SNPs) being in long‐range linkage disequilibrium with functional polymorphisms. Genome‐wide SNP analysis tools designed for cattle, allow for scanning divergences in allelic frequencies between distinct breeds and thus for identification of genomic regions which were divergently selected in breeds' histories. In this study, by using Bovine SNP50 assay, we attempted to identify genomic regions showing the highest differences in allele frequencies between two distinct cattle breeds – preserved, unselected Polish Red breed and highly selected Holstein cattle. Our study revealed 19 genomic regions encompassing 55 protein‐coding genes and numerous quantitative trait loci which potentially may underlie some of the phenotypic traits distinguishing the breeds. |
| Author | Bugno‐Poniewierska, Monika Frys‐Żurek, Monika Gurgul, Artur Pawlina, Klaudia |
| Author_xml | – sequence: 1 fullname: Gurgul, Artur – sequence: 2 fullname: Pawlina, Klaudia – sequence: 3 fullname: Frys‐Żurek, Monika – sequence: 4 fullname: Bugno‐Poniewierska, Monika |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/25124517$$D View this record in MEDLINE/PubMed |
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| Copyright | 2014 Japanese Society of Animal Science 2014 Japanese Society of Animal Science. Copyright © 2015 Japanese Society of Animal Science |
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| DOI | 10.1111/asj.12242 |
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| Keywords | Polish Red cattle SNP selection |
| Language | English |
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| Notes | http://dx.doi.org/10.1111/asj.12242 istex:E7D499D24C3B383D05E80D9FCFFFBC3DA897D951 Table S1 Genes identified in the regions with the highest SWAD.Table S2 Molecular function classification of the genes located within the regions with the highest SWAD (recognized by Panther System).Table S3 QTLs overlaping with the regions with the highest SWAD (obtained from Cattle QTL database, Hu et al. 2013). ark:/67375/WNG-RHWJB46N-L ArticleID:ASJ12242 ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 |
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| Publisher | Japanese Society of Zootechnical Science, Jan. 1999-<Apr. 2003> Blackwell Publishing Ltd |
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| SubjectTerms | Animals artificial selection Cattle Cattle - genetics DNA - genetics Female gene frequency Gene Frequency - genetics genes genetic improvement Genome - genetics Genotype & phenotype Holstein linkage disequilibrium Male Polish Red Polymorphism, Single Nucleotide - genetics Population genetics quantitative trait loci Quantitative Trait Loci - genetics selection Selection, Genetic - genetics single nucleotide polymorphism SNP |
| Title | Identification of differential selection traces in two Polish cattle breeds |
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